C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: YTH domain containing 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037763 Ythdc2-201 ENSMUSG00000034653 10090 + 18:44828665-44889720 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037763
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037763 0.898±0.09 0.733±0.40 1.634±0.03 2.232±0.63 0.999±0.15 1.081±0.21 0.839±0.09 0.568±0.11 1.367±0.96 0.712±0.41 0.782±0.17 1.262±0.41 0.729±0.32 2.263±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004UP CIL_0004UP_0002 CGP 18:44828665-45686024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004386 IEA helicase activity
GO:0005524 IEA ATP binding
GO:0005783 IEA endoplasmic reticulum
GO:0006200 IEA ATP catabolic process
GO:0008186 IEA RNA-dependent ATPase activity
GO:0034612 IEA response to tumor necrosis factor
GO:0044822 IEA poly(A) RNA binding
GO:0044829 IEA positive regulation by host of viral genome replication
GO:0070063 IEA RNA polymerase binding
GO:0070555 IEA response to interleukin-1

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000161863 YTHDC2-001 protein_coding Homo_sapiens 0 5943
ENST00000503857 YTHDC2-003 nonsense_mediated_decay Homo_sapiens 0 2331
ENST00000506333 YTHDC2-008 retained_intron Homo_sapiens 0 843
ENST00000507567 YTHDC2-006 retained_intron Homo_sapiens 0 407
ENST00000512600 YTHDC2-005 retained_intron Homo_sapiens 0 819
ENST00000514720 YTHDC2-007 protein_coding Homo_sapiens 0 612
ENST00000515883 YTHDC2-002 protein_coding Homo_sapiens 0 3103

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