C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037811 Apob-001 ENSMUSG00000020609 10090 + 12:7977648-8016835 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037811
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037811 0.062±0.04 0.004±0.00 0.196±0.06 0.826±0.19 0.008±0.00 4.904±0.86 66.162±42.10 0.092±0.02 0.002±0.00 0.052±0.02 61.738±53.56 0.005±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ID CIL_0007ID_0002 CGP 12:7977648-8285758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005515 IEA protein binding
GO:0005543 IEA phospholipid binding
GO:0005576 TAS extracellular region
GO:0005615 IEA extracellular space
GO:0005737 IEA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0005794 IEA Golgi apparatus
GO:0005886 IEA plasma membrane
GO:0006629 IGI lipid metabolic process
GO:0006642 IMP triglyceride mobilization
GO:0007283 IMP spermatogenesis
GO:0007399 IMP nervous system development
GO:0008201 IEA heparin binding
GO:0008203 IEA cholesterol metabolic process
GO:0008289 IEA lipid binding
GO:0009566 IMP fertilization
GO:0009615 IEA response to virus
GO:0009743 IEA response to carbohydrate
GO:0009791 IMP post-embryonic development
GO:0010033 IEA response to organic substance
GO:0010269 IEA response to selenium ion
GO:0010744 IEA positive regulation of macrophage derived foam cell differentiation
GO:0010884 IEA positive regulation of lipid storage
GO:0010886 IEA positive regulation of cholesterol storage
GO:0012506 IEA vesicle membrane
GO:0015629 IEA actin cytoskeleton
GO:0016042 IMP lipid catabolic process
GO:0017127 IEA cholesterol transporter activity
GO:0019433 IMP triglyceride catabolic process
GO:0030301 IMP cholesterol transport
GO:0030317 IMP sperm motility
GO:0031983 IEA vesicle lumen
GO:0032496 IEA response to lipopolysaccharide
GO:0033344 IGI cholesterol efflux
GO:0034359 IEA mature chylomicron
GO:0034361 IEA very-low-density lipoprotein particle
GO:0034362 IEA low-density lipoprotein particle
GO:0034363 IEA intermediate-density lipoprotein particle
GO:0034374 IEA low-density lipoprotein particle remodeling
GO:0034383 IEA low-density lipoprotein particle clearance
GO:0035473 IEA lipase binding
GO:0042157 IMP lipoprotein metabolic process
GO:0042158 IGI lipoprotein biosynthetic process
GO:0042159 IGI lipoprotein catabolic process
GO:0042627 IEA chylomicron
GO:0042632 IGI cholesterol homeostasis
GO:0042953 IGI lipoprotein transport
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045540 IMP regulation of cholesterol biosynthetic process
GO:0048844 IGI artery morphogenesis
GO:0050750 IEA low-density lipoprotein particle receptor binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071379 IEA cellular response to prostaglandin stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233242 APOB-001 protein_coding Homo_sapiens 0 8357
ENST00000399256 APOB-002 protein_coding Homo_sapiens 0 1951
ENST00000616098 APOB-201 protein_coding Homo_sapiens 0 8357

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