C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: THO complex 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000490103 THOC5-001 ENSG00000100296 9606 - 22:29505879-29553782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartLiverLungMuscleENST00000490103
Transcript ID Brain Breast Heart Liver Lung Muscle
ENST00000490103 1.743±0.00 0.857±0.00 0.654±0.00 0.761±0.00 0.722±0.00 1.131±0.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000346 IDA transcription export complex
GO:0000347 IDA THO complex
GO:0000445 IDA THO complex part of transcription export complex
GO:0000902 IEA cell morphogenesis
GO:0001824 IEA blastocyst development
GO:0003729 IEA mRNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006397 IEA mRNA processing
GO:0006406 IDA mRNA export from nucleus
GO:0008380 IEA RNA splicing
GO:0010468 IEA regulation of gene expression
GO:0010793 IEA regulation of mRNA export from nucleus
GO:0017145 IEA stem cell division
GO:0030224 IDA monocyte differentiation
GO:0032786 IMP positive regulation of DNA-templated transcription, elongation
GO:0045650 IEA negative regulation of macrophage differentiation
GO:0046784 IDA viral mRNA export from host cell nucleus
GO:0060215 ISS primitive hemopoiesis
GO:2000002 IMP negative regulation of DNA damage checkpoint
GO:2000035 IEA regulation of stem cell division

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038237 Thoc5-201 protein_coding Mus_musculus 0 2702
ENSMUST00000101615 Thoc5-001 protein_coding Mus_musculus 0 2416
ENSMUST00000144371 Thoc5-004 processed_transcript Mus_musculus 0 640
ENSMUST00000142543 Thoc5-002 protein_coding Mus_musculus 0 638
ENSMUST00000155872 Thoc5-005 processed_transcript Mus_musculus 0 610
ENSMUST00000148117 Thoc5-003 processed_transcript Mus_musculus 0 315
ENSMUST00000037912 Ssh2-001 protein_coding Mus_musculus 0.000000000005 79
ENSMUST00000074912 2010012O05Rik-201 protein_coding Mus_musculus 0.0000001 64

Loading