C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: fatty acid 2-hydroxylase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038475 Fa2h-001 ENSMUSG00000033579 10090 - 8:111345141-111393824 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038475
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038475 0.143±0.04 5.058±1.41 15.691±2.98 0.676±0.82 2.241±1.49 52.021±5.36 0.070±0.03 6.625±1.21 0.025±0.02 0.372±0.14 0.321±0.19 0.583±0.39 1.949±2.19 34.528±14.69

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000168 CIL_000168_0002 CGP 8:111311797-111393824
CIL_0002PJ CIL_0002PJ_0002 CGP 8:111345135-111522107

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001949 IMP sebaceous gland cell differentiation
GO:0005506 IEA iron ion binding
GO:0005783 IDA endoplasmic reticulum
GO:0006631 IDA fatty acid metabolic process
GO:0006633 IEA fatty acid biosynthetic process
GO:0006665 IEA sphingolipid metabolic process
GO:0016021 IEA integral component of membrane
GO:0020037 IEA heme binding
GO:0030258 IDA lipid modification
GO:0032286 IMP central nervous system myelin maintenance
GO:0032287 IMP peripheral nervous system myelin maintenance
GO:0042127 IMP regulation of cell proliferation
GO:0042634 IMP regulation of hair cycle
GO:0055114 IEA oxidation-reduction process
GO:0080132 IDA fatty acid alpha-hydroxylase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000219368 FA2H-001 protein_coding Homo_sapiens 0 1234
ENST00000562145 FA2H-003 retained_intron Homo_sapiens 0 237
ENST00000567683 FA2H-002 nonsense_mediated_decay Homo_sapiens 0 501
ENST00000569949 FA2H-004 protein_coding Homo_sapiens 0 483

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