C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vasorin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038770 Vasn-001 ENSMUSG00000039646 10090 + 16:4639941-4650802 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000038770
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000038770 17.972±2.36 15.041±1.50 16.663±1.22 4.489±0.00 27.634±10.07 10.541±0.20 8.997±1.15 16.416±2.34 6.632±2.00 40.223±5.85 36.948±12.52 10.912±4.11 7.516±0.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00009Y CIL_00009Y_0002 CGP 16:4616464-4679777
CIL_00009L CIL_00009L_0002 CGP 16:4626133-4679777
CIL_000003 CIL_000003_0003 CGP 16:4639941-4707695

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005615 IEA extracellular space
GO:0005739 IDA mitochondrion
GO:0005765 IEA lysosomal membrane
GO:0005886 IDA plasma membrane
GO:0009986 IEA cell surface
GO:0010719 IEA negative regulation of epithelial to mesenchymal transition
GO:0016021 IEA integral component of membrane
GO:0030512 IEA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0050431 IEA transforming growth factor beta binding
GO:0070062 IEA extracellular vesicular exosome
GO:0071456 IMP cellular response to hypoxia
GO:0071461 IMP cellular response to redox state

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304735 VASN-001 protein_coding Homo_sapiens 0 1609
ENST00000622615 VASN-201 protein_coding Homo_sapiens 0 1609

Loading