C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: colony stimulating factor 3 (granulocyte)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000038886 Csf3-001 ENSMUSG00000038067 10090 + 11:98701263-98703629 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000038886
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000038886 0.348±0.25 0.161±0.09 0.066±0.00 0.035±0.00 0.582±0.25 0.071±0.01 0.021±0.00 0.019±0.00 0.023±0.01 0.048±0.00 0.054±0.00 3.277±1.27 0.070±0.03 0.185±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0002 VISTA 11:98447152-99051430
CIL_0002PY CIL_0002PY_0002 CGP 11:98682554-98703629
CIL_0002PX CIL_0002PX_0002 CGP 11:98701263-98729435

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 NAS cytokine activity
GO:0005615 IEA extracellular space
GO:0006955 IEA immune response
GO:0008083 IEA growth factor activity
GO:0008284 IEA positive regulation of cell proliferation
GO:0014068 IEA positive regulation of phosphatidylinositol 3-kinase signaling
GO:0019899 IEA enzyme binding
GO:0030838 IEA positive regulation of actin filament polymerization
GO:0030851 NAS granulocyte differentiation
GO:0032092 IEA positive regulation of protein binding
GO:0033138 IEA positive regulation of peptidyl-serine phosphorylation
GO:0042993 IEA positive regulation of transcription factor import into nucleus
GO:0045639 IGI positive regulation of myeloid cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050731 IEA positive regulation of peptidyl-tyrosine phosphorylation
GO:0051897 IEA positive regulation of protein kinase B signaling
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071345 IEA cellular response to cytokine stimulus
GO:1901215 IEA negative regulation of neuron death
GO:2000251 IEA positive regulation of actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000225474 CSF3-001 protein_coding Homo_sapiens 0 462
ENST00000331769 CSF3-002 protein_coding Homo_sapiens 0 446
ENST00000394148 CSF3-004 protein_coding Homo_sapiens 0 233
ENST00000394149 CSF3-003 protein_coding Homo_sapiens 0 555
ENST00000479880 CSF3-005 retained_intron Homo_sapiens 0 189
ENST00000577675 CSF3-006 protein_coding Homo_sapiens 0 279
ENST00000579852 CSF3-007 nonsense_mediated_decay Homo_sapiens 0 392
ENST00000583218 CSF3-008 protein_coding Homo_sapiens 2.8026e-45 185

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