C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: colony stimulating factor 3 (granulocyte)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000225474 CSF3-001 ENSG00000108342 9606 + 17:40015444-40017813 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainLungOvaryPlacentaENST00000225474
Transcript ID Adrenal Brain Lung Ovary Placenta
ENST00000225474 0.132±0.00 0.776±0.00 54.076±0.00 0.202±0.14 3.315±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002PY CIL_0002PY_0001 CGP 17:39980797-40017813
CIL_0002PX CIL_0002PX_0001 CGP 17:40015361-40061215

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005125 NAS:IEA cytokine activity
GO:0005130 TAS granulocyte colony-stimulating factor receptor binding
GO:0005576 IEA extracellular region
GO:0005615 IEA extracellular space
GO:0006955 IEA immune response
GO:0007275 TAS multicellular organismal development
GO:0008083 IEA growth factor activity
GO:0008284 IEA positive regulation of cell proliferation
GO:0014068 IDA positive regulation of phosphatidylinositol 3-kinase signaling
GO:0019221 NAS cytokine-mediated signaling pathway
GO:0019899 IPI enzyme binding
GO:0030838 IDA positive regulation of actin filament polymerization
GO:0030851 NAS granulocyte differentiation
GO:0032092 IDA positive regulation of protein binding
GO:0033138 IDA positive regulation of peptidyl-serine phosphorylation
GO:0042993 IDA positive regulation of transcription factor import into nucleus
GO:0045639 IEA positive regulation of myeloid cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0050731 IDA positive regulation of peptidyl-tyrosine phosphorylation
GO:0051897 IDA positive regulation of protein kinase B signaling
GO:0071222 IEA cellular response to lipopolysaccharide
GO:0071345 IDA cellular response to cytokine stimulus
GO:1901215 IEA negative regulation of neuron death
GO:2000251 IDA positive regulation of actin cytoskeleton reorganization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038886 Csf3-001 protein_coding Mus_musculus 0 462

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