C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, subfamily H (eag-related), member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039366 Kcnh8-001 ENSMUSG00000035580 10090 + 17:52602709-52979194 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039366
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039366 0.039±0.00 0.071±0.01 0.045±0.01 1.335±0.85 0.047±0.05 0.217±0.12 0.025±0.02 0.017±0.00 0.005±0.00 0.030±0.01 0.017±0.00 0.084±0.03 0.001±0.00 0.455±0.27

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HR CIL_0004HR_0002 CGP 17:51736187-52979194
CIL_0008WQ CIL_0008WQ_0002 VISTA 17:52007830-52609076
CIL_00088Q CIL_00088Q_0002 VISTA 17:52029852-52630752
CIL_0007ZH CIL_0007ZH_0002 VISTA 17:52159484-52761092
CIL_0008BJ CIL_0008BJ_0002 VISTA 17:52165120-52765827
CIL_0004HS CIL_0004HS_0002 CGP 17:52602709-53463321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000155 IEA phosphorelay sensor kinase activity
GO:0000160 IEA phosphorelay signal transduction system
GO:0005249 IBA voltage-gated potassium channel activity
GO:0005887 IBA integral component of plasma membrane
GO:0023014 IEA signal transduction by phosphorylation
GO:0042391 IBA regulation of membrane potential
GO:0071805 IBA potassium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000090810 kcnh8-001 protein_coding Danio_rerio 0 939
ENSDART00000153763 KCNH4 (2 of 2)-001 protein_coding Danio_rerio 0 446
ENST00000257981 KCNH3-001 protein_coding Homo_sapiens 0 206
ENST00000328405 KCNH8-001 protein_coding Homo_sapiens 0 4532
ENST00000452398 KCNH8-002 nonsense_mediated_decay Homo_sapiens 0 2263
ENST00000475063 KCNH8-003 processed_transcript Homo_sapiens 0 527

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