C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, subfamily H (eag-related), member 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000452398 KCNH8-002 ENSG00000183960 9606 + 3:19148534-19534739 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverOvaryENST00000452398
Transcript ID Adipose Bladder Brain Breast Heart Liver Ovary
ENST00000452398 0.001±0.00 0.019±0.00 1.262±0.25 0.278±0.00 0.021±0.00 0.001±0.00 0.048±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004HR CIL_0004HR_0001 CGP 3:18345387-19535646
CIL_0008WQ CIL_0008WQ_0001 VISTA 3:18557122-19158368
CIL_00088Q CIL_00088Q_0001 VISTA 3:18575077-19175981
CIL_0007ZH CIL_0007ZH_0001 VISTA 3:18686255-19287863
CIL_0008BJ CIL_0008BJ_0001 VISTA 3:18692357-19293077
CIL_0004HS CIL_0004HS_0001 CGP 3:19148454-19947025

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000155 IEA phosphorelay sensor kinase activity
GO:0000160 IEA phosphorelay signal transduction system
GO:0004871 IEA signal transducer activity
GO:0005515 IEA protein binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0023014 IEA signal transduction by phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039366 Kcnh8-001 protein_coding Mus_musculus 0 2263
ENSMUST00000184279 Kcnh8-002 retained_intron Mus_musculus 0 1057
ENSMUST00000107363 Kcnh4-001 protein_coding Mus_musculus 0 292
ENSMUST00000107361 Kcnh4-002 protein_coding Mus_musculus 0 292
ENSMUST00000041415 Kcnh3-201 protein_coding Mus_musculus 1e-28 134

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