C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: listerin E3 ubiquitin protein ligase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039449 Ltn1-201 ENSMUSG00000052299 10090 - 16:87376651-87432606 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039449
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039449 5.424±1.58 2.142±0.87 3.280±2.21 5.221±0.57 2.814±1.12 1.530±0.42 1.757±0.27 3.664±0.87 2.178±0.94 3.262±0.13 3.014±0.83 3.855±2.10 4.758±2.23 4.980±2.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002XV CIL_0002XV_0002 CGP 16:87354185-87432606
CIL_0006DO CIL_0006DO_0002 CGP 16:87376651-87440573

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0008219 IEA cell death
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361371 LTN1-008 protein_coding Homo_sapiens 0 5156
ENST00000389194 LTN1-001 protein_coding Homo_sapiens 0 5168
ENST00000389195 LTN1-002 protein_coding Homo_sapiens 0 1930
ENST00000475344 LTN1-005 retained_intron Homo_sapiens 0 429
ENST00000483326 LTN1-004 nonsense_mediated_decay Homo_sapiens 0 1107
ENST00000614971 LTN1-201 protein_coding Homo_sapiens 0 5168

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