C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane channel-like gene family 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000039500 Tmc1-201 ENSMUSG00000024749 10090 - 19:20783458-20954202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000039500
Transcript ID Adipose Adrenal Brain Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000039500 0.009±0.00 0.127±0.06 0.024±0.00 0.236±0.06 0.011±0.00 0.027±0.02 0.028±0.02 0.041±0.02 0.011±0.00 0.064±0.04 0.020±0.02 0.891±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000W2 CIL_0000W2_0002 CGP 19:20783458-21282289

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005245 IGI voltage-gated calcium channel activity
GO:0009897 IDA external side of plasma membrane
GO:0016021 IEA integral component of membrane
GO:0032426 IDA stereocilium bundle tip
GO:0050910 IGI detection of mechanical stimulus involved in sensory perception of sound
GO:0060005 IGI vestibular reflex
GO:0060117 IMP auditory receptor cell development
GO:0070588 IGI calcium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297784 TMC1-001 protein_coding Homo_sapiens 0 2691
ENST00000340019 TMC1-201 protein_coding Homo_sapiens 0 2691
ENST00000469455 TMC1-005 processed_transcript Homo_sapiens 0 680
ENST00000486417 TMC1-002 processed_transcript Homo_sapiens 0 693

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