C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 3 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040005 Alkbh3-201 ENSMUSG00000040174 10090 - 2:93980637-94010730 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040005
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040005 16.946±4.99 12.123±2.69 16.071±2.09 6.789±2.79 10.613±2.46 14.061±1.07 13.386±1.57 9.190±3.11 9.471±0.10 13.312±1.66 10.579±2.40 12.252±1.41 20.878±4.82

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006281 ISS DNA repair
GO:0006307 ISS DNA dealkylation involved in DNA repair
GO:0008198 ISS ferrous iron binding
GO:0008283 ISS cell proliferation
GO:0016706 IDA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0035552 ISS oxidative single-stranded DNA demethylation
GO:0043734 ISS DNA-N1-methyladenine dioxygenase activity
GO:0051747 IDA cytosine C-5 DNA demethylase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302708 ALKBH3-001 protein_coding Homo_sapiens 0 915
ENST00000529366 ALKBH3-010 protein_coding Homo_sapiens 0 675
ENST00000530754 ALKBH3-005 retained_intron Homo_sapiens 0 593
ENST00000530803 ALKBH3-002 nonsense_mediated_decay Homo_sapiens 0 327
ENST00000532410 ALKBH3-011 processed_transcript Homo_sapiens 0 259
ENST00000532962 ALKBH3-003 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000533200 ALKBH3-009 processed_transcript Homo_sapiens 0 339
ENST00000534171 ALKBH3-006 nonsense_mediated_decay Homo_sapiens 1.4013e-45 187

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