C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alkB, alkylation repair homolog 3 (E. coli)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000530803 ALKBH3-002 ENSG00000166199 9606 + 11:43880874-43920266 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002UX CIL_0002UX_0002 CGP 11:43556436-43920266
CIL_0002UW CIL_0002UW_0002 CGP 11:43880811-43944338

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0005737 IEA cytoplasm
GO:0006281 IDA DNA repair
GO:0006307 IDA DNA dealkylation involved in DNA repair
GO:0008198 IDA ferrous iron binding
GO:0008283 IMP cell proliferation
GO:0031418 IEA L-ascorbic acid binding
GO:0035552 IDA oxidative single-stranded DNA demethylation
GO:0043734 IDA DNA-N1-methyladenine dioxygenase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040005 Alkbh3-201 protein_coding Mus_musculus 0 327
ENSMUST00000138046 Alkbh3-006 processed_transcript Mus_musculus 0 324
ENSMUST00000126378 Alkbh3-002 protein_coding Mus_musculus 0 298
ENSMUST00000111240 Alkbh3-001 protein_coding Mus_musculus 0 298
ENSMUST00000127231 Alkbh3-007 processed_transcript Mus_musculus 9.80909e-45 185

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