C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040077 Polr2f-201 ENSMUSG00000033020 10090 + 15:79141351-79151774 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040077
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040077 40.620±7.76 49.053±3.18 122.104±10.26 80.959±29.98 26.946±10.48 45.586±9.37 39.423±5.97 52.461±10.84 54.404±32.74 31.293±2.07 37.052±2.80 53.214±36.20 150.755±85.09 31.617±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0003QJ CIL_0003QJ_0002 CGP 15:79129349-79151774
CIL_0007CX CIL_0007CX_0002 CGP 15:79141351-79164490

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001054 IBA RNA polymerase I activity
GO:0001055 IBA RNA polymerase II activity
GO:0001056 IBA RNA polymerase III activity
GO:0003677 IEA DNA binding
GO:0005634 ISS nucleus
GO:0005665 ISS DNA-directed RNA polymerase II, core complex
GO:0005666 IBA DNA-directed RNA polymerase III complex
GO:0005730 IEA nucleolus
GO:0005736 IBA DNA-directed RNA polymerase I complex
GO:0006360 IBA transcription from RNA polymerase I promoter
GO:0006366 ISS transcription from RNA polymerase II promoter
GO:0006383 IBA transcription from RNA polymerase III promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000405557 POLR2F-010 protein_coding Homo_sapiens 0 374
ENST00000407936 POLR2F-009 protein_coding Homo_sapiens 0 374
ENST00000442738 POLR2F-001 protein_coding Homo_sapiens 0 496
ENST00000443002 POLR2F-003 nonsense_mediated_decay Homo_sapiens 0 374
ENST00000460648 POLR2F-002 protein_coding Homo_sapiens 1e-23 113
ENST00000470701 POLR2F-007 protein_coding Homo_sapiens 0 455
ENST00000483713 POLR2F-005 nonsense_mediated_decay Homo_sapiens 0 390
ENST00000484894 POLR2F-008 processed_transcript Homo_sapiens 0 333
ENST00000488684 POLR2F-004 protein_coding Homo_sapiens 0 270
ENST00000492213 POLR2F-006 protein_coding Homo_sapiens 0 359
ENST00000606538 POLR2F-013 protein_coding Homo_sapiens 0 375

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