C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sperm antigen with calponin homology and coiled-coil domains 1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040105 Specc1l-201 ENSMUSG00000033444 10090 + 10:75229855-75312399 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000040105
Transcript ID Adrenal Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040105 2.744±1.21 1.901±0.00 1.489±0.06 3.598±0.68 7.367±2.79 0.933±0.00 0.764±0.29 5.454±2.56 4.033±1.40 14.690±6.27 7.601±1.63 2.262±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001E0 CIL_0001E0_0002 CGP 10:75060896-75312399
CIL_0006Z1 CIL_0006Z1_0003 CGP 10:75212073-75334788

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 IEA cytoplasm
GO:0005815 IDA microtubule organizing center
GO:0005921 IEA gap junction
GO:0007026 IDA negative regulation of microtubule depolymerization
GO:0007049 IEA cell cycle
GO:0007155 ISO cell adhesion
GO:0015629 IDA actin cytoskeleton
GO:0015630 IDA microtubule cytoskeleton
GO:0016477 IMP cell migration
GO:0030036 IMP actin cytoskeleton organization
GO:0030835 IDA negative regulation of actin filament depolymerization
GO:0031941 IDA filamentous actin
GO:0051301 IEA cell division
GO:0060325 ISO face morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000314328 SPECC1L-001 protein_coding Homo_sapiens 0 4095
ENST00000358654 SPECC1L-ADORA2A-001 nonsense_mediated_decay Homo_sapiens 0 3229
ENST00000416735 SPECC1L-004 processed_transcript Homo_sapiens 0 403
ENST00000421374 SPECC1L-002 protein_coding Homo_sapiens 0 2848
ENST00000437398 SPECC1L-201 protein_coding Homo_sapiens 0 4095
ENST00000440893 SPECC1L-003 protein_coding Homo_sapiens 0 627
ENST00000541492 SPECC1L-006 protein_coding Homo_sapiens 0 3766

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