C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 43
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040135 Nup43-001 ENSMUSG00000040034 10090 + 10:7667503-7678881 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040135
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040135 4.056±1.38 1.949±0.88 4.679±0.73 6.801±4.67 3.057±1.85 2.823±0.94 1.780±0.56 3.724±0.59 9.562±9.58 2.479±0.39 2.372±0.21 5.532±1.87 11.619±7.57 12.428±3.85

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005X2 CIL_0005X2_0002 CGP 10:7589800-7681136
CIL_00050T CIL_00050T_0002 CGP 10:7629373-7681136

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000776 IEA kinetochore
GO:0003674 ND molecular_function
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0015031 IEA protein transport
GO:0031080 ISS nuclear pore outer ring
GO:0051028 IEA mRNA transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340413 NUP43-004 protein_coding Homo_sapiens 0 1413
ENST00000367402 NUP43-002 nonsense_mediated_decay Homo_sapiens 0 630
ENST00000367404 NUP43-007 protein_coding Homo_sapiens 0 630
ENST00000403890 NUP43-005 nonsense_mediated_decay Homo_sapiens 0 532
ENST00000463048 NUP43-003 processed_transcript Homo_sapiens 0 291
ENST00000505438 AC004069.1-001 processed_pseudogene Homo_sapiens 0 959
ENST00000543637 NUP43-008 protein_coding Homo_sapiens 0 556

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