C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleoporin 43kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340413 NUP43-004 ENSG00000120253 9606 - 6:149724315-149746572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340413
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340413 3.544±0.00 2.509±0.00 3.026±0.72 2.453±1.06 4.111±2.06 4.260±2.59 2.315±1.16 1.859±0.00 4.156±2.97 9.837±5.83 4.424±0.59 5.282±0.62

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000278 TAS mitotic cell cycle
GO:0000776 IDA kinetochore
GO:0005515 IPI:IEA protein binding
GO:0005635 TAS nuclear envelope
GO:0005829 TAS cytosol
GO:0005975 TAS carbohydrate metabolic process
GO:0007059 IEA chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0007077 TAS mitotic nuclear envelope disassembly
GO:0008645 TAS hexose transport
GO:0010827 TAS regulation of glucose transport
GO:0015031 IEA protein transport
GO:0015758 TAS glucose transport
GO:0016032 TAS viral process
GO:0019221 TAS cytokine-mediated signaling pathway
GO:0031080 NAS nuclear pore outer ring
GO:0044281 TAS small molecule metabolic process
GO:0051028 IEA mRNA transport
GO:0055085 TAS transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000040135 Nup43-001 protein_coding Mus_musculus 0 1413
ENSMUST00000162527 Nup43-002 retained_intron Mus_musculus 0 1013
ENSMUST00000161060 Nup43-004 retained_intron Mus_musculus 0 604
ENSMUST00000162346 Nup43-003 retained_intron Mus_musculus 0 291

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