C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 7 (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040148 Bbs7-002 ENSMUSG00000037325 10090 - 3:36573142-36613389 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaENSMUST00000040148
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta
ENSMUST00000040148 0.219±0.00 0.781±0.29 1.288±0.00 0.569±0.17 0.817±0.25 0.477±0.11 0.472±0.00 0.532±0.27 0.561±0.10 0.966±0.47 0.439±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KF CIL_0000KF_0002 CGP 3:36564866-36613477
CIL_0007AB CIL_0007AB_0002 CGP 3:36573142-36690167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001654 IGI eye development
GO:0005634 IDA nucleus
GO:0005813 IDA centrosome
GO:0005886 IEA plasma membrane
GO:0005930 IDA axoneme
GO:0007224 IGI smoothened signaling pathway
GO:0007420 IGI brain development
GO:0007507 IGI heart development
GO:0008104 IMP protein localization
GO:0015031 IEA protein transport
GO:0016020 IDA membrane
GO:0034464 IDA BBSome
GO:0035058 IEA nonmotile primary cilium assembly
GO:0036064 IDA ciliary basal body
GO:0045444 IEP fat cell differentiation
GO:0060021 IGI palate development
GO:0060173 IGI limb development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264499 BBS7-001 protein_coding Homo_sapiens 0 2484
ENST00000506636 BBS7-003 protein_coding Homo_sapiens 0 2340
ENST00000507814 BBS7-007 protein_coding Homo_sapiens 0 499

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