C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Bardet-Biedl syndrome 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000506636 BBS7-003 ENSG00000138686 9606 - 4:121827727-121870450 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainKidneyLiverLungMuscleOvaryPlacentaTestisENST00000506636
Transcript ID Adipose Adrenal Bladder Brain Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000506636 1.268±0.00 0.376±0.00 0.743±0.00 3.099±0.00 1.944±0.00 0.508±0.25 0.782±0.02 0.581±0.00 1.860±0.21 0.572±0.41 3.814±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KF CIL_0000KF_0001 CGP 4:121816444-121870497
CIL_0007AB CIL_0007AB_0001 CGP 4:121824440-121951754

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001103 IPI RNA polymerase II repressing transcription factor binding
GO:0001947 ISS heart looping
GO:0005515 IPI:IEA protein binding
GO:0005813 IDA centrosome
GO:0005886 IEA plasma membrane
GO:0006357 IPI regulation of transcription from RNA polymerase II promoter
GO:0007368 ISS determination of left/right symmetry
GO:0007601 IEA visual perception
GO:0015031 IEA protein transport
GO:0032402 ISS melanosome transport
GO:0032436 IPI positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0034464 IDA BBSome
GO:0035058 IEA nonmotile primary cilium assembly
GO:0045444 ISS fat cell differentiation
GO:0048546 ISS digestive tract morphogenesis
GO:0051877 ISS pigment granule aggregation in cell center
GO:0060271 ISS cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108155 Bbs7-003 protein_coding Mus_musculus 0 2357
ENSMUST00000108156 Bbs7-001 protein_coding Mus_musculus 0 2351
ENSMUST00000040148 Bbs7-002 protein_coding Mus_musculus 0 2340

Loading