C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0007AB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138686-ENSG00000138741 CGP 9606 4:121824440-121951754
GeneTranscriptPositionBiotype
ENSG00000138686 (BBS7)
Bardet-Biedl syndrome 7
ENST00000264499 (BBS7-001) 121824440-121870497 protein_coding
ENST00000502444 (BBS7-004) 121861294-121870487 retained_intron
ENST00000505692 (BBS7-005) 121858603-121861679 retained_intron
ENST00000506636 (BBS7-003) 121827727-121870450 protein_coding
ENST00000507814 (BBS7-007) 121824924-121828673 protein_coding
ENST00000508536 (BBS7-006) 121855430-121859023 retained_intron
ENSG00000138741 (TRPC3)
transient receptor potential cation channel, subfamily C, member 3
ENST00000264811 (TRPC3-001) 121879027-121933457 protein_coding
ENST00000379645 (TRPC3-002) 121879028-121951754 protein_coding
ENST00000502968 (TRPC3-003) 121932760-121950874 protein_coding
ENST00000506449 (TRPC3-004) 121879716-121933113 nonsense_mediated_decay
ENST00000513531 (TRPC3-005) 121879736-121933038 protein_coding
ENSG00000261501 (RP11-63B13.1)
ENST00000567769 (RP11-63B13.1-001) 121870583-121872848 lincRNA
CIL_0007AB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037325-ENSMUSG00000027716 CGP 10090 3:36573142-36690167
GeneTranscriptPositionBiotype
ENSMUSG00000027716 (Trpc3)
transient receptor potential cation channel, subfamily C, member 3
ENSMUST00000029271 (Trpc3-001) 36620482-36690167 protein_coding
ENSMUST00000123220 (Trpc3-004) 36620562-36621361 processed_transcript
ENSMUST00000129322 (Trpc3-003) 36620562-36621339 processed_transcript
ENSMUST00000133542 (Trpc3-005) 36638356-36640620 retained_intron
ENSMUST00000146475 (Trpc3-002) 36669203-36690167 processed_transcript
ENSMUSG00000037325 (Bbs7)
Bardet-Biedl syndrome 7 (human)
ENSMUST00000040148 (Bbs7-002) 36573142-36613389 protein_coding
ENSMUST00000108155 (Bbs7-003) 36574871-36613285 protein_coding
ENSMUST00000108156 (Bbs7-001) 36573142-36613477 protein_coding
ENSMUST00000129671 (Bbs7-004) 36609337-36613389 retained_intron
ENSMUST00000142333 (Bbs7-005) 36610182-36613389 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007AB_0001ENSG00000138686ENST00000264499ENST00000502444ENST00000505692ENST00000506636ENST00000507814ENST00000508536ENSG00000138741ENST00000264811ENST00000379645ENST00000502968ENST00000506449ENST00000513531ENSG00000261501ENST00000567769CIL_0007AB_0002ENSMUSG00000027716ENSMUST00000029271ENSMUST00000123220ENSMUST00000129322ENSMUST00000133542ENSMUST00000146475ENSMUSG00000037325ENSMUST00000040148ENSMUST00000108155ENSMUST00000108156ENSMUST00000129671ENSMUST00000142333
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007AB_0001ENSG00000138686ENST00000264499ENST00000502444ENST00000505692ENST00000506636ENST00000507814ENSG00000138741ENST00000264811ENST00000379645ENST00000506449ENST00000513531ENSG00000261501ENST00000567769CIL_0007AB_0002ENSMUSG00000027716ENSMUST00000029271ENSMUST00000123220ENSMUST00000133542ENSMUST00000146475ENSMUSG00000037325ENSMUST00000040148ENSMUST00000108155ENSMUST00000108156ENSMUST00000129671ENSMUST00000142333
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000138686 ENST00000264499 0.986±0.00 1.076±0.00 N/A 3.366±1.23 0.837±0.25 1.166±0.37 0.306±0.00 0.787±0.56 1.151±1.02 1.757±0.61 0.209±0.00 1.653±0.52 0.408±0.17 1.801±0.04
ENST00000502444 N/A N/A 2.149±0.00 N/A N/A N/A N/A N/A N/A N/A 0.543±0.00 N/A 1.220±0.00 N/A
ENST00000505692 N/A N/A N/A N/A 1.198±0.00 N/A N/A 0.725±0.00 N/A N/A N/A N/A N/A N/A
ENST00000506636 1.268±0.00 0.376±0.00 0.743±0.00 3.099±0.00 N/A N/A N/A 1.944±0.00 0.508±0.25 0.782±0.02 0.581±0.00 1.860±0.21 0.572±0.41 3.814±1.61
ENST00000507814 N/A N/A N/A N/A N/A 2.221±0.00 N/A N/A N/A 1.543±0.00 N/A N/A 0.537±0.00 N/A
ENST00000508536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138741 ENST00000264811 N/A N/A N/A 0.902±0.00 N/A N/A N/A N/A 0.087±0.00 0.215±0.00 N/A N/A N/A N/A
ENST00000379645 0.046±0.00 N/A N/A 0.460±0.00 N/A 0.026±0.00 0.048±0.00 0.084±0.00 N/A 0.154±0.00 N/A 0.064±0.04 0.115±0.02 0.082±0.00
ENST00000502968 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506449 0.123±0.00 N/A 0.347±0.00 0.159±0.00 0.114±0.00 N/A N/A N/A 0.647±0.00 N/A 0.023±0.00 0.078±0.00 N/A 0.107±0.00
ENST00000513531 N/A 0.012±0.00 N/A N/A N/A N/A 0.013±0.00 0.082±0.04 N/A N/A N/A 0.042±0.00 0.145±0.10 0.128±0.00
ENSG00000261501 ENST00000567769 0.228±0.00 0.591±0.00 0.190±0.00 0.227±0.12 0.249±0.08 0.138±0.00 0.150±0.00 0.169±0.00 0.147±0.01 0.189±0.02 0.038±0.00 0.072±0.03 0.105±0.00 0.402±0.15
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027716 ENSMUST00000029271 3.608±1.81 0.962±0.18 0.630±0.05 3.371±0.29 0.992±0.32 0.689±0.25 2.514±0.29 0.883±0.10 0.116±0.04 1.334±0.37 0.895±0.18 4.222±1.60 0.923±1.11 0.122±0.06
ENSMUST00000123220 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.577±0.00 N/A
ENSMUST00000129322 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133542 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.361±0.00
ENSMUST00000146475 N/A 0.566±0.00 N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A 1.294±0.47 N/A N/A
ENSMUSG00000037325 ENSMUST00000040148 0.219±0.00 0.781±0.29 N/A 1.288±0.00 0.569±0.17 0.817±0.25 0.477±0.11 0.472±0.00 0.532±0.27 0.561±0.10 N/A 0.966±0.47 0.439±0.12 N/A
ENSMUST00000108155 0.278±0.00 0.231±0.00 N/A 0.642±0.00 0.238±0.09 0.209±0.05 0.208±0.00 N/A N/A 1.071±0.07 N/A 0.775±0.00 N/A N/A
ENSMUST00000108156 0.923±0.30 0.424±0.00 2.791±0.23 3.838±1.76 0.759±0.35 N/A 0.249±0.18 1.751±0.44 2.678±1.73 1.086±0.47 2.769±0.21 2.217±1.82 2.168±1.31 12.999±1.56
ENSMUST00000129671 N/A 3.666±1.08 N/A N/A 0.720±0.00 N/A N/A N/A 0.751±0.00 N/A N/A 0.807±0.39 N/A N/A
ENSMUST00000142333 N/A 0.661±0.00 N/A N/A 0.562±0.00 0.570±0.00 N/A N/A 0.933±0.00 1.328±0.00 N/A 0.696±0.22 N/A N/A

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