C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB42, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040411 Rab42-001 ENSMUSG00000089687 10090 - 4:132302197-132303385 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040411
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040411 1.346±0.46 1.500±0.42 1.041±0.00 0.249±0.07 1.463±0.86 1.648±0.39 1.536±0.26 3.327±0.76 0.211±0.15 0.939±0.21 0.365±0.09 1.747±0.81 0.565±0.12 11.758±3.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099N CIL_00099N_0002 VISTA 4:131775516-132379227
CIL_0001X2 CIL_0001X2_0002 CGP 4:132274375-132303385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008150 ND biological_process
GO:0015031 IEA protein transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373826 RAB42-001 protein_coding Homo_sapiens 0 448
ENST00000465518 RAB42-002 processed_transcript Homo_sapiens 0 627
ENST00000555078 RAB42P1-001 processed_pseudogene Homo_sapiens 0 259

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