C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle amine transport protein 1 homolog (T californica)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040430 Vat1-001 ENSMUSG00000034993 10090 - 11:101458745-101466230 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040430
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040430 57.469±18.36 41.077±12.04 73.230±13.49 38.272±25.74 56.131±19.58 46.639±8.51 9.596±0.61 22.093±4.06 10.436±2.26 92.186±7.43 4.474±0.91 59.754±15.80 64.967±20.74 5.944±2.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063T CIL_00063T_0002 CGP 11:101448407-101466230
CIL_00061G CIL_00061G_0002 CGP 11:101458745-101471853

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005741 ISS mitochondrial outer membrane
GO:0008270 IEA zinc ion binding
GO:0010637 ISS negative regulation of mitochondrial fusion
GO:0016491 IEA oxidoreductase activity
GO:0055114 IEA oxidation-reduction process
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000355653 VAT1-001 protein_coding Homo_sapiens 0 1328
ENST00000420567 VAT1-002 protein_coding Homo_sapiens 0 1072
ENST00000587062 VAT1-004 protein_coding Homo_sapiens 0 335
ENST00000587147 VAT1-008 protein_coding Homo_sapiens 0 460
ENST00000587173 VAT1-003 protein_coding Homo_sapiens 0 1075
ENST00000589709 VAT1-006 protein_coding Homo_sapiens 0 582
ENST00000589828 VAT1-007 protein_coding Homo_sapiens 0 370
ENST00000590924 VAT1-005 protein_coding Homo_sapiens 0 584
ENST00000592388 VAT1-009 nonsense_mediated_decay Homo_sapiens 2e-31 139

Loading