C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000108828-ENSG00000108830 CGP 9606 17:43014605-43032036
GeneTranscriptPositionBiotype
ENSG00000108828 (VAT1)
vesicle amine transport 1 		ENST00000355653 (VAT1-001) 43014605-43022418 protein_coding
ENST00000420567 (VAT1-002) 43015918-43020273 protein_coding
ENST00000587062 (VAT1-004) 43018749-43025122 protein_coding
ENST00000587147 (VAT1-008) 43016067-43018045 protein_coding
ENST00000587173 (VAT1-003) 43015899-43022356 protein_coding
ENST00000589709 (VAT1-006) 43017842-43019555 protein_coding
ENST00000589828 (VAT1-007) 43018122-43019027 protein_coding
ENST00000590924 (VAT1-005) 43017832-43025123 protein_coding
ENST00000592388 (VAT1-009) 43014607-43016313 nonsense_mediated_decay
ENSG00000108830 (RND2)
Rho family GTPase 2 		ENST00000587117 (RND2-002) 43025241-43026253 retained_intron
ENST00000587250 (RND2-001) 43025241-43032036 protein_coding
CIL_00061G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034993-ENSMUSG00000001313 CGP 10090 11:101458745-101471853
GeneTranscriptPositionBiotype
ENSMUSG00000001313 (Rnd2)
Rho family GTPase 2 		ENSMUST00000001347 (Rnd2-001) 101468175-101471853 protein_coding
ENSMUST00000134980 (Rnd2-003) 101465484-101471105 processed_transcript
ENSMUST00000153185 (Rnd2-002) 101464999-101471853 processed_transcript
ENSMUSG00000034993 (Vat1)
vesicle amine transport protein 1 homolog (T californica) 		ENSMUST00000040430 (Vat1-001) 101458745-101466230 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061G_0001ENSG00000108828ENST00000355653ENST00000420567ENST00000587062ENST00000587147ENST00000587173ENST00000589709ENST00000589828ENST00000590924ENST00000592388ENSG00000108830ENST00000587117ENST00000587250CIL_00061G_0002ENSMUSG00000001313ENSMUST00000001347ENSMUST00000134980ENSMUST00000153185ENSMUSG00000034993ENSMUST00000040430
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061G_0001ENSG00000108828ENST00000355653ENST00000589709ENST00000592388ENSG00000108830ENST00000587117ENST00000587250CIL_00061G_0002ENSMUSG00000001313ENSMUST00000001347ENSMUST00000134980ENSMUST00000153185ENSMUSG00000034993ENSMUST00000040430
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000108828 ENST00000355653 269.554±0.00 45.601±0.00 1.257±0.00 15.033±14.03 59.164±55.25 78.781±74.04 13.837±11.70 60.918±0.00 13.902±10.12 67.691±60.88 19.880±0.00 85.125±74.68 88.977±37.77 70.394±51.19
ENST00000420567 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587062 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589709 N/A N/A 7.344±0.00 5.153±0.00 N/A N/A N/A N/A 15.474±0.00 8.532±0.00 1.892±0.00 18.000±0.00 N/A N/A
ENST00000589828 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000590924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000592388 N/A 33.593±0.00 N/A N/A N/A N/A N/A N/A 13.004±0.00 N/A N/A N/A N/A N/A
ENSG00000108830 ENST00000587117 N/A N/A N/A N/A N/A N/A N/A N/A 1.445±0.00 N/A N/A 0.384±0.00 N/A N/A
ENST00000587250 0.432±0.00 1.290±0.00 0.036±0.00 7.781±5.78 0.498±0.43 1.604±1.31 0.132±0.10 1.183±0.66 2.221±1.95 0.398±0.30 0.114±0.02 2.005±2.05 0.245±0.11 13.343±4.63
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001313 ENSMUST00000001347 N/A N/A N/A 70.469±20.09 N/A N/A 3.732±0.00 7.123±0.00 6.695±3.43 N/A 1.347±0.12 33.584±6.94 74.941±37.49 8.227±2.89
ENSMUST00000134980 N/A N/A N/A 40.303±0.00 N/A N/A N/A N/A N/A N/A N/A 38.641±0.00 57.706±0.00 N/A
ENSMUST00000153185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 32.550±1.62 1.210±0.00
ENSMUSG00000034993 ENSMUST00000040430 57.469±18.36 41.077±12.04 73.230±13.49 38.272±25.74 56.131±19.58 46.639±8.51 9.596±0.61 22.093±4.06 10.436±2.26 92.186±7.43 4.474±0.91 59.754±15.80 64.967±20.74 5.944±2.56

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