C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040790 Slx4-001 ENSMUSG00000039738 10090 - 16:3979123-4001680 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000040790
Transcript ID Brain Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000040790 5.437±2.47 1.289±0.00 0.603±0.49 0.905±0.61 1.254±0.36 0.676±0.00 10.053±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AZ CIL_0000AZ_0002 CGP 16:3945007-4003770
CIL_0000AY CIL_0000AY_0002 CGP 16:3979105-4040024

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000724 IEA double-strand break repair via homologous recombination
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0000784 IEA nuclear chromosome, telomeric region
GO:0000790 IEA nuclear chromatin
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006260 IEA DNA replication
GO:0006281 IEA DNA repair
GO:0006289 IEA nucleotide-excision repair
GO:0008047 IEA enzyme activator activity
GO:0008821 IEA crossover junction endodeoxyribonuclease activity
GO:0010792 IEA DNA double-strand break processing involved in repair via single-strand annealing
GO:0017108 IEA 5'-flap endonuclease activity
GO:0030054 IEA cell junction
GO:0033557 IEA Slx1-Slx4 complex
GO:0043085 IEA positive regulation of catalytic activity
GO:0048257 IEA 3'-flap endonuclease activity
GO:0048476 IEA Holliday junction resolvase complex
GO:0070522 IEA ERCC4-ERCC1 complex
GO:0072429 IEA response to intra-S DNA damage checkpoint signaling

Homologs

No Homologs available.

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