C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0000AY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000188827-ENSG00000213918 CGP 9606 16:3581181-3680143
GeneTranscriptPositionBiotype
ENSG00000126602 (TRAP1)
TNF receptor-associated protein 1 		ENST00000246957 (TRAP1-001) 3658037-3717597 protein_coding
ENST00000538171 (TRAP1-003) 3658038-3717513 protein_coding
ENST00000570403 (TRAP1-009) 3689052-3717512 nonsense_mediated_decay
ENST00000570514 (TRAP1-015) 3674336-3676214 retained_intron
ENST00000571011 (TRAP1-007) 3686100-3717524 nonsense_mediated_decay
ENST00000571538 (TRAP1-010) 3679735-3691133 protein_coding
ENST00000571804 (TRAP1-008) 3677498-3717516 nonsense_mediated_decay
ENST00000573872 (TRAP1-012) 3666026-3677650 processed_transcript
ENST00000574175 (TRAP1-013) 3672802-3677570 nonsense_mediated_decay
ENST00000574494 (TRAP1-017) 3658038-3662267 retained_intron
ENST00000574941 (TRAP1-006) 3678285-3717526 processed_transcript
ENST00000575671 (TRAP1-004) 3658038-3678304 protein_coding
ENST00000575707 (TRAP1-016) 3651639-3661990 nonsense_mediated_decay
ENST00000575854 (TRAP1-011) 3674656-3677658 processed_transcript
ENST00000576106 (TRAP1-005) 3678366-3717553 processed_transcript
ENST00000576335 (TRAP1-018) 3666082-3689075 protein_coding
ENST00000576788 (TRAP1-014) 3676094-3676946 processed_transcript
ENSG00000188827 (SLX4)
SLX4 structure-specific endonuclease subunit 		ENST00000294008 (SLX4-001) 3581181-3611598 protein_coding
ENST00000466154 (SLX4-003) 3595611-3609259 retained_intron
ENST00000486524 (SLX4-002) 3600621-3611585 retained_intron
ENSG00000261938 (RP11-461A8.1)
 ENST00000573982 (RP11-461A8.1-001) 3581181-3583266 lincRNA
CIL_0000AY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000039738-ENSMUSG00000005980 CGP 10090 16:3979105-4040024
GeneTranscriptPositionBiotype
ENSMUSG00000005980 (Dnase1)
deoxyribonuclease I 		ENSMUST00000006136 (Dnase1-004) 4036970-4040024 protein_coding
ENSMUST00000120009 (Dnase1-001) 4037031-4040024 protein_coding
ENSMUST00000125961 (Dnase1-003) 4037101-4040024 retained_intron
ENSMUST00000132466 (Dnase1-008) 4038222-4038871 retained_intron
ENSMUST00000137748 (Dnase1-005) 4036942-4039256 protein_coding
ENSMUST00000144792 (Dnase1-002) 4037098-4040023 retained_intron
ENSMUST00000149670 (Dnase1-007) 4037276-4038260 retained_intron
ENSMUST00000157044 (Dnase1-006) 4036973-4038021 protein_coding
ENSMUST00000175755 (Dnase1-011) 4039130-4040024 protein_coding
ENSMUST00000176642 (Dnase1-009) 4037304-4039339 retained_intron
ENSMUST00000177337 (Dnase1-010) 4037155-4039875 nonsense_mediated_decay
ENSMUSG00000005981 (Trap1)
TNF receptor-associated protein 1 		ENSMUST00000006137 (Trap1-001) 4039971-4077827 protein_coding
ENSMUST00000137945 (Trap1-004) 4040140-4044698 processed_transcript
ENSMUST00000138594 (Trap1-002) 4065330-4077827 retained_intron
ENSMUST00000150354 (Trap1-003) 4056416-4077775 nonsense_mediated_decay
ENSMUSG00000039738 (Slx4)
SLX4 structure-specific endonuclease subunit homolog (S. cerevisiae) 		ENSMUST00000040790 (Slx4-001) 3979123-4001680 protein_coding
ENSMUST00000128980 (Slx4-004) 3979128-3985519 retained_intron
ENSMUST00000145706 (Slx4-005) 3979133-3982204 retained_intron
ENSMUST00000146569 (Slx4-003) 3979105-3989106 nonsense_mediated_decay
ENSMUST00000156542 (Slx4-002) 3979124-3995718 nonsense_mediated_decay
ENSMUST00000165830 (Slx4-006) 3994768-4001252 protein_coding
ENSMUST00000171658 (Slx4-008) 4001201-4003752 protein_coding
ENSMUST00000171762 (Slx4-007) 4001003-4003770 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AY_0001ENSG00000126602ENST00000246957ENST00000538171ENST00000570403ENST00000570514ENST00000571011ENST00000571538ENST00000571804ENST00000573872ENST00000574175ENST00000574494ENST00000574941ENST00000575671ENST00000575707ENST00000575854ENST00000576106ENST00000576335ENST00000576788ENSG00000188827ENST00000294008ENST00000466154ENST00000486524ENSG00000261938ENST00000573982CIL_0000AY_0002ENSMUSG00000005980ENSMUST00000006136ENSMUST00000120009ENSMUST00000125961ENSMUST00000132466ENSMUST00000137748ENSMUST00000144792ENSMUST00000149670ENSMUST00000157044ENSMUST00000175755ENSMUST00000176642ENSMUST00000177337ENSMUSG00000005981ENSMUST00000006137ENSMUST00000137945ENSMUST00000138594ENSMUST00000150354ENSMUSG00000039738ENSMUST00000040790ENSMUST00000128980ENSMUST00000145706ENSMUST00000146569ENSMUST00000156542ENSMUST00000165830ENSMUST00000171658ENSMUST00000171762
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0000AY_0001ENSG00000126602ENST00000246957ENST00000538171ENST00000575671ENSG00000188827ENST00000294008ENST00000466154ENST00000486524ENSG00000261938ENST00000573982CIL_0000AY_0002ENSMUSG00000005980ENSMUST00000006136ENSMUST00000120009ENSMUST00000144792ENSMUST00000177337ENSMUSG00000005981ENSMUST00000006137ENSMUST00000138594ENSMUSG00000039738ENSMUST00000040790ENSMUST00000128980ENSMUST00000145706ENSMUST00000146569ENSMUST00000156542ENSMUST00000171762
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000126602 ENST00000246957 16.863±0.00 9.655±0.00 6.245±0.00 22.438±9.96 14.565±7.27 10.120±5.51 21.942±13.60 19.073±8.41 17.832±15.34 8.509±4.67 45.991±37.29 17.870±8.20 19.662±5.22 21.151±6.07
ENST00000538171 7.129±0.00 12.362±0.00 N/A 9.984±0.00 14.781±0.00 8.987±0.00 N/A 11.894±4.76 21.892±0.00 5.910±0.00 21.370±6.80 16.812±3.79 14.601±3.67 19.790±1.47
ENST00000570403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570514 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571011 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571538 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000571804 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000573872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574175 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574494 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574941 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575671 N/A 6.675±0.00 N/A N/A 2.342±0.00 3.298±0.00 N/A N/A 2.001±0.00 N/A N/A 11.878±5.50 N/A 8.048±0.00
ENST00000575707 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575854 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576106 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576335 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188827 ENST00000294008 1.015±0.00 1.069±0.00 0.366±0.00 1.349±0.00 0.455±0.29 0.585±0.00 0.242±0.19 0.473±0.39 0.407±0.00 0.380±0.12 0.344±0.19 0.814±0.15 0.687±0.33 7.918±2.54
ENST00000466154 N/A N/A N/A 0.158±0.00 N/A 0.318±0.00 N/A 0.114±0.00 N/A N/A N/A 0.463±0.00 N/A N/A
ENST00000486524 N/A N/A 0.144±0.00 N/A N/A N/A N/A N/A 0.560±0.00 0.396±0.00 0.090±0.00 N/A N/A N/A
ENSG00000261938 ENST00000573982 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.559±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005980 ENSMUST00000006136 N/A N/A N/A N/A N/A N/A N/A 160.749±41.99 N/A N/A N/A N/A N/A N/A
ENSMUST00000120009 N/A N/A N/A N/A N/A N/A N/A 683.941±86.20 N/A N/A N/A N/A N/A N/A
ENSMUST00000125961 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144792 N/A N/A N/A 6.303±0.48 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149670 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000157044 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175755 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176642 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177337 N/A N/A N/A N/A N/A N/A N/A 234.099±5.49 N/A N/A N/A N/A N/A N/A
ENSMUSG00000005981 ENSMUST00000006137 77.030±8.90 98.603±36.44 41.796±0.63 33.297±7.91 61.237±7.47 40.994±4.93 61.385±2.93 168.512±48.08 83.706±15.41 30.922±3.32 63.751±1.40 72.500±8.57 41.182±15.13 35.146±4.88
ENSMUST00000137945 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138594 N/A 47.077±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000150354 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000039738 ENSMUST00000040790 N/A N/A N/A 5.437±2.47 N/A N/A N/A 1.289±0.00 0.603±0.49 N/A 0.905±0.61 1.254±0.36 0.676±0.00 10.053±0.00
ENSMUST00000128980 N/A 1.603±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145706 1.659±0.66 2.738±0.35 2.209±0.64 4.388±1.11 3.639±0.51 2.859±0.68 0.582±0.04 4.750±1.47 2.455±1.57 2.255±0.46 0.522±0.00 3.563±0.74 2.835±0.51 22.653±2.69
ENSMUST00000146569 0.993±0.40 1.188±0.19 N/A 1.671±0.51 1.636±0.59 0.680±0.00 0.496±0.11 2.300±0.55 0.425±0.23 1.083±0.00 0.442±0.00 2.386±0.68 1.685±0.66 7.462±1.42
ENSMUST00000156542 1.498±0.69 2.407±0.38 0.506±0.00 4.867±2.75 1.632±0.52 1.232±0.66 N/A 3.073±1.27 0.813±0.60 1.377±0.57 0.357±0.18 3.072±1.07 2.953±1.62 15.686±1.10
ENSMUST00000165830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000171762 N/A N/A N/A 4.170±0.00 N/A N/A N/A N/A N/A N/A 2.209±0.00 N/A 7.897±1.14 34.815±0.00

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