C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurogenic differentiation 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041099 Neurod1-001 ENSMUSG00000034701 10090 - 2:79452521-79456751 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonENSMUST00000041099
Transcript ID Brain Colon
ENSMUST00000041099 8.040±4.56 1.759±0.43

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00080Y CIL_00080Y_0002 VISTA 2:79161477-79762272
CIL_0004C0 CIL_0004C0_0003 CGP 2:79255426-79456785
CIL_0004BX CIL_0004BX_0003 CGP 2:79330543-79456785
CIL_0004BY CIL_0004BY_0003 CGP 2:79452521-79672966

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001102 IEA RNA polymerase II activating transcription factor binding
GO:0001105 IEA RNA polymerase II transcription coactivator activity
GO:0003326 IGI pancreatic A cell fate commitment
GO:0003329 IGI pancreatic PP cell fate commitment
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003690 IEA double-stranded DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005622 IDA intracellular
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006913 IEA nucleocytoplasmic transport
GO:0007263 IEA nitric oxide mediated signal transduction
GO:0008134 IEA transcription factor binding
GO:0009749 IEA response to glucose
GO:0009952 IMP anterior/posterior pattern specification
GO:0021542 IMP dentate gyrus development
GO:0021549 IMP cerebellum development
GO:0023019 IDA signal transduction involved in regulation of gene expression
GO:0030073 IEA insulin secretion
GO:0030902 IMP hindbrain development
GO:0031018 IMP endocrine pancreas development
GO:0035881 IDA amacrine cell differentiation
GO:0035883 IMP enteroendocrine cell differentiation
GO:0042493 IEA response to drug
GO:0042593 IMP glucose homeostasis
GO:0043010 IGI camera-type eye development
GO:0043065 IDA positive regulation of apoptotic process
GO:0043565 IDA sequence-specific DNA binding
GO:0045165 IGI cell fate commitment
GO:0045597 IDA positive regulation of cell differentiation
GO:0045664 IGI regulation of neuron differentiation
GO:0045666 IDA positive regulation of neuron differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046426 IDA negative regulation of JAK-STAT cascade
GO:0046982 IPI protein heterodimerization activity
GO:0048562 IMP embryonic organ morphogenesis
GO:0048839 IMP inner ear development
GO:0051091 IDA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0060730 IDA regulation of intestinal epithelial structure maintenance
GO:0070888 IDA E-box binding
GO:0071156 IMP regulation of cell cycle arrest
GO:0071333 IEA cellular response to glucose stimulus
GO:2000675 IMP negative regulation of type B pancreatic cell apoptotic process
GO:2000679 IEA positive regulation of transcription regulatory region DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295108 NEUROD1-001 protein_coding Homo_sapiens 0 3393

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