C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004BY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000019566-ENSDARG00000038938 CGP 7955 9:45357658-45486703
GeneTranscriptPositionBiotype
ENSDARG00000019566 (neurod)
neurogenic differentiation 		ENSDART00000011837 (neurod-001) 45357658-45361008 protein_coding
ENSDARG00000038938 (ssfa2)
sperm specific antigen 2 		ENSDART00000056844 (ssfa2-201) 45466749-45486702 protein_coding
ENSDART00000091327 (ssfa2-202) 45423206-45457884 protein_coding
ENSDART00000147990 (ssfa2-002) 45370917-45435794 protein_coding
ENSDART00000148826 (ssfa2-001) 45457577-45486703 protein_coding
CIL_0004BY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162992-ENSG00000138434 CGP 9606 2:181673088-181930738
GeneTranscriptPositionBiotype
ENSG00000162992 (NEUROD1)
neuronal differentiation 1 		ENST00000295108 (NEUROD1-001) 181676467-181680876 protein_coding
ENST00000496876 (NEUROD1-003) 181673088-181680547 processed_transcript
ENSG00000223873 (AC013733.5)
 ENST00000434334 (AC013733.5-001) 181694442-181694900 processed_pseudogene
ENSG00000225570 (AC013733.4)
 ENST00000449835 (AC013733.4-001) 181690380-181693415 lincRNA
ENSG00000234595 (AC013733.3)
 ENST00000440371 (AC013733.3-001) 181683113-181685707 antisense
ENSG00000260742 (RP11-366L5.1)
 ENST00000567327 (RP11-366L5.1-001) 181887851-181891663 antisense
CIL_0004BY_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034701-ENSMUSG00000027007 CGP 10090 2:79452521-79672966
GeneTranscriptPositionBiotype
ENSMUSG00000027007 (Ssfa2)
sperm specific antigen 2 		ENSMUST00000111784 (Ssfa2-004) 79635455-79672966 protein_coding
ENSMUST00000111785 (Ssfa2-001) 79635352-79672966 protein_coding
ENSMUST00000111788 (Ssfa2-003) 79635426-79672966 protein_coding
ENSMUST00000124938 (Ssfa2-005) 79635461-79636434 processed_transcript
ENSMUST00000133266 (Ssfa2-002) 79639182-79672966 processed_transcript
ENSMUSG00000034701 (Neurod1)
neurogenic differentiation 1 		ENSMUST00000041099 (Neurod1-001) 79452521-79456751 protein_coding
ENSMUSG00000075256 (Cerkl)
ceramide kinase-like 		ENSMUST00000099974 (Cerkl-002) 79331752-79428954 processed_transcript
ENSMUST00000123859 (Cerkl-004) 79332595-79428997 processed_transcript
ENSMUST00000130499 (Cerkl-009) 79354788-79370890 processed_transcript
ENSMUST00000143602 (Cerkl-003) 79332593-79428907 processed_transcript
ENSMUST00000143974 (Cerkl-001) 79332530-79428891 protein_coding
ENSMUST00000145766 (Cerkl-007) 79387516-79391139 processed_transcript
ENSMUST00000147402 (Cerkl-011) 79332502-79333682 processed_transcript
ENSMUST00000152413 (Cerkl-006) 79388848-79393034 processed_transcript
ENSMUST00000152549 (Cerkl-005) 79332593-79428891 processed_transcript
ENSMUST00000153602 (Cerkl-012) 79338569-79456785 processed_transcript
ENSMUST00000156731 (Cerkl-010) 79330543-79338603 protein_coding
ENSMUST00000156830 (Cerkl-008) 79343233-79370865 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BY_0001ENSDARG00000019566ENSDART00000011837ENSDARG00000038938ENSDART00000056844ENSDART00000091327ENSDART00000147990ENSDART00000148826CIL_0004BY_0002ENSG00000162992ENST00000295108ENST00000496876ENSG00000223873ENST00000434334ENSG00000225570ENST00000449835ENSG00000234595ENST00000440371ENSG00000260742ENST00000567327CIL_0004BY_0003ENSMUSG00000027007ENSMUST00000111784ENSMUST00000111785ENSMUST00000111788ENSMUST00000124938ENSMUST00000133266ENSMUSG00000034701ENSMUST00000041099ENSMUSG00000075256ENSMUST00000099974ENSMUST00000123859ENSMUST00000130499ENSMUST00000143602ENSMUST00000143974ENSMUST00000145766ENSMUST00000147402ENSMUST00000152413ENSMUST00000152549ENSMUST00000153602ENSMUST00000156731ENSMUST00000156830
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004BY_0001ENSDARG00000019566ENSDART00000011837ENSDARG00000038938ENSDART00000056844ENSDART00000091327ENSDART00000148826CIL_0004BY_0002ENSG00000162992ENST00000295108ENST00000496876ENSG00000223873ENST00000434334ENSG00000225570ENST00000449835ENSG00000234595ENST00000440371ENSG00000260742ENST00000567327CIL_0004BY_0003ENSMUSG00000027007ENSMUST00000111784ENSMUST00000111785ENSMUST00000111788ENSMUST00000133266ENSMUSG00000034701ENSMUST00000041099ENSMUSG00000075256ENSMUST00000099974ENSMUST00000130499
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000019566 ENSDART00000011837 N/A N/A N/A 188.890±64.36 N/A N/A N/A 0.106±0.00 0.033±0.00 N/A 5.098±0.00 N/A N/A N/A
ENSDARG00000038938 ENSDART00000056844 N/A N/A N/A 21.435±10.90 N/A N/A 3.465±1.55 12.282±1.17 N/A N/A 0.905±0.00 N/A N/A N/A
ENSDART00000091327 N/A N/A N/A 17.412±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000147990 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000148826 N/A N/A N/A 13.787±8.55 N/A N/A 2.530±0.90 2.326±0.65 2.449±0.00 N/A 2.300±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000162992 ENST00000295108 N/A N/A N/A 1.000±0.49 N/A 0.205±0.00 N/A N/A 0.050±0.00 N/A 0.038±0.00 N/A N/A 0.582±0.00
ENST00000496876 N/A N/A N/A 0.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000223873 ENST00000434334 0.035±0.00 N/A N/A N/A 0.078±0.00 0.036±0.00 N/A 0.077±0.00 0.069±0.00 N/A 0.134±0.00 N/A N/A 0.495±0.43
ENSG00000225570 ENST00000449835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.11
ENSG00000234595 ENST00000440371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00
ENSG00000260742 ENST00000567327 0.147±0.00 0.330±0.00 N/A 0.082±0.04 0.093±0.00 0.085±0.06 0.053±0.01 0.148±0.00 0.050±0.00 0.068±0.03 0.006±0.00 0.105±0.08 0.087±0.04 0.114±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027007 ENSMUST00000111784 N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A 1.994±0.54 4.257±2.60 N/A
ENSMUST00000111785 5.593±1.45 2.540±1.60 10.827±6.49 3.850±3.57 1.840±0.78 12.332±2.11 3.057±0.25 8.653±3.00 2.801±1.37 4.984±1.95 2.620±0.49 3.084±2.32 6.186±3.62 1.648±0.43
ENSMUST00000111788 N/A 5.791±0.55 N/A N/A 1.491±0.88 2.616±0.18 N/A 2.961±0.20 1.453±0.00 2.054±0.14 N/A 1.963±1.26 N/A 0.907±0.31
ENSMUST00000124938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133266 0.504±0.00 N/A N/A N/A 1.513±0.00 N/A 0.581±0.00 N/A 0.921±0.02 N/A 0.537±0.00 5.194±4.43 4.600±3.68 N/A
ENSMUSG00000034701 ENSMUST00000041099 N/A N/A N/A 8.040±4.56 N/A 1.759±0.43 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000075256 ENSMUST00000099974 2.689±0.00 0.300±0.00 2.047±0.00 N/A N/A 0.768±0.00 N/A N/A N/A N/A 0.548±0.18 1.021±0.00 N/A N/A
ENSMUST00000123859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.201±0.26
ENSMUST00000143602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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