C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00080Y_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs626 VISTA 9606 2:181386314-181987082
GeneTranscriptPositionBiotype
ENSG00000115232 (ITGA4)
integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 		ENST00000233573 (ITGA4-006) 181457428-181509805 protein_coding
ENST00000339307 (ITGA4-003) 181457207-181476218 protein_coding
ENST00000397033 (ITGA4-001) 181457225-181536187 protein_coding
ENST00000465522 (ITGA4-004) 181457404-181486309 retained_intron
ENST00000468948 (ITGA4-011) 181523335-181524365 retained_intron
ENST00000473002 (ITGA4-010) 181493034-181495832 retained_intron
ENST00000476089 (ITGA4-002) 181457202-181459391 retained_intron
ENST00000476824 (ITGA4-008) 181498572-181527450 retained_intron
ENST00000478440 (ITGA4-005) 181458241-181479716 processed_transcript
ENST00000484404 (ITGA4-007) 181457713-181475290 retained_intron
ENST00000490435 (ITGA4-009) 181498281-181511771 retained_intron
ENST00000614742 (ITGA4-201) 181457225-181535562 protein_coding
ENSG00000150722 (PPP1R1C)
protein phosphatase 1, regulatory (inhibitor) subunit 1C 		ENST00000280295 (PPP1R1C-004) 181985877-182130018 protein_coding
ENST00000409137 (PPP1R1C-003) 181985868-182131398 protein_coding
ENST00000409702 (PPP1R1C-005) 181986022-182129538 protein_coding
ENST00000461410 (PPP1R1C-012) 182061463-182064123 retained_intron
ENST00000464264 (PPP1R1C-008) 181954524-182129067 processed_transcript
ENST00000465612 (PPP1R1C-010) 181954559-182117444 processed_transcript
ENST00000475249 (PPP1R1C-002) 181954496-182130166 processed_transcript
ENST00000479855 (PPP1R1C-011) 182030883-182117511 processed_transcript
ENST00000486067 (PPP1R1C-007) 181954492-182117516 processed_transcript
ENST00000490645 (PPP1R1C-009) 181954531-182117685 processed_transcript
ENST00000494189 (PPP1R1C-006) 182103601-182117917 processed_transcript
ENST00000495820 (PPP1R1C-001) 181954241-182117518 processed_transcript
ENSG00000162992 (NEUROD1)
neuronal differentiation 1 		ENST00000295108 (NEUROD1-001) 181676467-181680876 protein_coding
ENST00000496876 (NEUROD1-003) 181673088-181680547 processed_transcript
ENSG00000213958 (KRT18P29)
keratin 18 pseudogene 29 		ENST00000397031 (KRT18P29-001) 181961212-181962478 processed_pseudogene
ENSG00000223873 (AC013733.5)
 ENST00000434334 (AC013733.5-001) 181694442-181694900 processed_pseudogene
ENSG00000225570 (AC013733.4)
 ENST00000449835 (AC013733.4-001) 181690380-181693415 lincRNA
ENSG00000226681 (AC020595.1)
 ENST00000456446 (AC020595.1-001) 181422154-181425749 lincRNA
ENSG00000234595 (AC013733.3)
 ENST00000440371 (AC013733.3-001) 181683113-181685707 antisense
ENSG00000234663 (AC104820.2)
 ENST00000414750 (AC104820.2-003) 181101932-181192053 lincRNA
ENST00000424170 (AC104820.2-002) 181123835-181339776 lincRNA
ENST00000424655 (AC104820.2-005) 181123942-181342311 lincRNA
ENST00000428474 (AC104820.2-004) 181123896-181362911 lincRNA
ENST00000435411 (AC104820.2-001) 181123837-181399559 lincRNA
ENSG00000260742 (RP11-366L5.1)
 ENST00000567327 (RP11-366L5.1-001) 181887851-181891663 antisense
CIL_00080Y_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs626 VISTA 10090 2:79161477-79762272
GeneTranscriptPositionBiotype
ENSMUSG00000027007 (Ssfa2)
sperm specific antigen 2 		ENSMUST00000111784 (Ssfa2-004) 79635455-79672966 protein_coding
ENSMUST00000111785 (Ssfa2-001) 79635352-79672966 protein_coding
ENSMUST00000111788 (Ssfa2-003) 79635426-79672966 protein_coding
ENSMUST00000124938 (Ssfa2-005) 79635461-79636434 processed_transcript
ENSMUST00000133266 (Ssfa2-002) 79639182-79672966 processed_transcript
ENSMUSG00000027009 (Itga4)
integrin alpha 4 		ENSMUST00000099972 (Itga4-001) 79255500-79333123 protein_coding
ENSMUST00000126312 (Itga4-005) 79255947-79292977 processed_transcript
ENSMUST00000135919 (Itga4-004) 79255721-79293273 processed_transcript
ENSMUST00000141094 (Itga4-003) 79255572-79273986 processed_transcript
ENSMUST00000155105 (Itga4-002) 79255426-79257852 processed_transcript
ENSMUSG00000034683 (Ppp1r1c)
protein phosphatase 1, regulatory (inhibitor) subunit 1C 		ENSMUST00000040863 (Ppp1r1c-002) 79707922-79808536 protein_coding
ENSMUST00000090760 (Ppp1r1c-001) 79707780-79810313 protein_coding
ENSMUST00000111780 (Ppp1r1c-005) 79707923-79815593 protein_coding
ENSMUST00000141978 (Ppp1r1c-003) 79708062-79818496 processed_transcript
ENSMUST00000144432 (Ppp1r1c-004) 79786591-79809292 processed_transcript
ENSMUSG00000034701 (Neurod1)
neurogenic differentiation 1 		ENSMUST00000041099 (Neurod1-001) 79452521-79456751 protein_coding
ENSMUSG00000075256 (Cerkl)
ceramide kinase-like 		ENSMUST00000099974 (Cerkl-002) 79331752-79428954 processed_transcript
ENSMUST00000123859 (Cerkl-004) 79332595-79428997 processed_transcript
ENSMUST00000130499 (Cerkl-009) 79354788-79370890 processed_transcript
ENSMUST00000143602 (Cerkl-003) 79332593-79428907 processed_transcript
ENSMUST00000143974 (Cerkl-001) 79332530-79428891 protein_coding
ENSMUST00000145766 (Cerkl-007) 79387516-79391139 processed_transcript
ENSMUST00000147402 (Cerkl-011) 79332502-79333682 processed_transcript
ENSMUST00000152413 (Cerkl-006) 79388848-79393034 processed_transcript
ENSMUST00000152549 (Cerkl-005) 79332593-79428891 processed_transcript
ENSMUST00000153602 (Cerkl-012) 79338569-79456785 processed_transcript
ENSMUST00000156731 (Cerkl-010) 79330543-79338603 protein_coding
ENSMUST00000156830 (Cerkl-008) 79343233-79370865 processed_transcript
ENSMUSG00000081284 (Gm13673)
predicted gene 13673 		ENSMUST00000122056 (Gm13673-001) 79359865-79360395 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00080Y_0001ENSG00000115232ENST00000233573ENST00000339307ENST00000397033ENST00000465522ENST00000468948ENST00000473002ENST00000476089ENST00000476824ENST00000478440ENST00000484404ENST00000490435ENST00000614742ENSG00000150722ENST00000280295ENST00000409137ENST00000409702ENST00000461410ENST00000464264ENST00000465612ENST00000475249ENST00000479855ENST00000486067ENST00000490645ENST00000494189ENST00000495820ENSG00000162992ENST00000295108ENST00000496876ENSG00000213958ENST00000397031ENSG00000223873ENST00000434334ENSG00000225570ENST00000449835ENSG00000226681ENST00000456446ENSG00000234595ENST00000440371ENSG00000234663ENST00000414750ENST00000424170ENST00000424655ENST00000428474ENST00000435411ENSG00000260742ENST00000567327CIL_00080Y_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115232 ENST00000233573 N/A N/A 0.324±0.00 N/A N/A N/A 0.540±0.00 0.724±0.00 2.131±0.00 6.093±0.00 N/A 1.516±0.00 N/A N/A
ENST00000339307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397033 0.411±0.00 5.097±0.00 0.135±0.00 0.130±0.00 0.402±0.00 1.229±0.90 N/A 0.626±0.09 N/A 5.379±0.89 N/A 0.306±0.05 1.132±0.34 N/A
ENST00000465522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476824 N/A N/A N/A N/A N/A 4.201±0.00 N/A 1.636±0.00 N/A N/A 0.116±0.00 N/A N/A N/A
ENST00000478440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.503±0.00 N/A N/A N/A
ENST00000490435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614742 N/A N/A N/A N/A N/A 1.377±0.00 0.230±0.00 N/A N/A N/A N/A 1.676±0.27 3.272±0.00 0.384±0.00
ENSG00000150722 ENST00000280295 N/A N/A N/A 0.080±0.00 N/A N/A 2.660±1.55 N/A N/A N/A N/A 0.024±0.00 N/A N/A
ENST00000409137 N/A N/A 0.017±0.00 0.141±0.00 N/A N/A 0.902±0.09 N/A N/A 0.014±0.00 N/A N/A 0.030±0.00 N/A
ENST00000409702 N/A N/A N/A 0.623±0.47 N/A 0.045±0.00 1.077±0.00 N/A N/A 0.144±0.05 0.688±0.00 N/A 0.051±0.00 N/A
ENST00000461410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464264 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.284±0.00 N/A N/A N/A N/A
ENST00000465612 0.050±0.00 0.112±0.00 N/A N/A N/A N/A N/A 1.186±0.00 N/A N/A N/A N/A N/A N/A
ENST00000475249 N/A N/A N/A N/A 0.019±0.00 N/A N/A 0.366±0.00 N/A 0.090±0.00 0.138±0.00 N/A N/A N/A
ENST00000479855 N/A 0.207±0.00 N/A N/A 0.275±0.00 0.390±0.00 N/A 0.758±0.00 0.712±0.41 0.403±0.00 N/A 0.161±0.06 0.759±0.15 N/A
ENST00000486067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.142±0.00 5.049±1.50
ENST00000490645 0.054±0.00 N/A N/A N/A N/A N/A N/A 1.359±1.08 1.125±0.00 N/A N/A N/A 0.129±0.07 6.386±0.32
ENST00000494189 N/A N/A N/A 0.248±0.10 N/A N/A N/A N/A 0.186±0.00 N/A N/A N/A 0.087±0.00 N/A
ENST00000495820 0.035±0.00 0.069±0.00 N/A N/A N/A N/A N/A N/A N/A 0.128±0.00 N/A 0.019±0.00 N/A 9.413±0.00
ENSG00000162992 ENST00000295108 N/A N/A N/A 1.000±0.49 N/A 0.205±0.00 N/A N/A 0.050±0.00 N/A 0.038±0.00 N/A N/A 0.582±0.00
ENST00000496876 N/A N/A N/A 0.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213958 ENST00000397031 N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A 0.020±0.00 N/A
ENSG00000223873 ENST00000434334 0.035±0.00 N/A N/A N/A 0.078±0.00 0.036±0.00 N/A 0.077±0.00 0.069±0.00 N/A 0.134±0.00 N/A N/A 0.495±0.43
ENSG00000225570 ENST00000449835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.174±0.11
ENSG00000226681 ENST00000456446 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.545±0.00
ENSG00000234595 ENST00000440371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.040±0.00
ENSG00000234663 ENST00000414750 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00 N/A
ENST00000424170 N/A N/A 0.641±0.00 N/A N/A 0.171±0.00 N/A N/A N/A N/A N/A 0.028±0.00 N/A N/A
ENST00000424655 0.034±0.00 N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000428474 N/A N/A N/A N/A N/A 0.376±0.00 N/A N/A 1.244±0.00 0.413±0.10 N/A 0.555±0.69 0.083±0.00 0.096±0.07
ENST00000435411 N/A N/A N/A N/A 0.129±0.09 N/A N/A N/A 0.037±0.00 N/A N/A 0.035±0.02 N/A N/A
ENSG00000260742 ENST00000567327 0.147±0.00 0.330±0.00 N/A 0.082±0.04 0.093±0.00 0.085±0.06 0.053±0.01 0.148±0.00 0.050±0.00 0.068±0.03 0.006±0.00 0.105±0.08 0.087±0.04 0.114±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027007 ENSMUST00000111784 N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A 1.994±0.54 4.257±2.60 N/A
ENSMUST00000111785 5.593±1.45 2.540±1.60 10.827±6.49 3.850±3.57 1.840±0.78 12.332±2.11 3.057±0.25 8.653±3.00 2.801±1.37 4.984±1.95 2.620±0.49 3.084±2.32 6.186±3.62 1.648±0.43
ENSMUST00000111788 N/A 5.791±0.55 N/A N/A 1.491±0.88 2.616±0.18 N/A 2.961±0.20 1.453±0.00 2.054±0.14 N/A 1.963±1.26 N/A 0.907±0.31
ENSMUST00000124938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133266 0.504±0.00 N/A N/A N/A 1.513±0.00 N/A 0.581±0.00 N/A 0.921±0.02 N/A 0.537±0.00 5.194±4.43 4.600±3.68 N/A
ENSMUSG00000027009 ENSMUST00000099972 1.030±0.52 0.314±0.11 1.293±0.18 1.023±0.23 4.605±1.27 1.149±0.30 0.499±0.19 0.536±0.09 5.215±5.94 3.610±0.48 0.569±0.17 0.932±0.42 0.874±0.39 0.133±0.02
ENSMUST00000126312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141094 N/A 0.407±0.07 N/A N/A N/A 1.678±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034683 ENSMUST00000040863 N/A N/A 0.024±0.00 0.298±0.00 N/A N/A 0.065±0.00 N/A N/A N/A 0.074±0.00 N/A N/A N/A
ENSMUST00000090760 N/A N/A N/A 0.137±0.10 N/A N/A N/A N/A 0.003±0.00 N/A N/A N/A 0.016±0.00 N/A
ENSMUST00000111780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.02 N/A N/A N/A
ENSMUST00000141978 N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A 0.011±0.00 0.003±0.00 N/A N/A
ENSMUST00000144432 0.032±0.00 N/A 0.010±0.00 0.364±0.34 0.035±0.00 0.104±0.00 0.028±0.00 0.033±0.00 N/A N/A 0.084±0.05 0.053±0.00 0.027±0.02 5.847±1.84
ENSMUSG00000034701 ENSMUST00000041099 N/A N/A N/A 8.040±4.56 N/A 1.759±0.43 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000075256 ENSMUST00000099974 2.689±0.00 0.300±0.00 2.047±0.00 N/A N/A 0.768±0.00 N/A N/A N/A N/A 0.548±0.18 1.021±0.00 N/A N/A
ENSMUST00000123859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.201±0.26
ENSMUST00000143602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081284 ENSMUST00000122056 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A 0.093±0.12 N/A N/A N/A 0.074±0.09 0.075±0.00

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