C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004C0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000061186-ENSDARG00000079397 CGP 7955 9:45108068-45355573
GeneTranscriptPositionBiotype
ENSDARG00000061186 (itga4)
integrin alpha 4 		ENSDART00000086963 (itga4-201) 45108199-45154224 protein_coding
ENSDART00000149577 (itga4-001) 45108068-45153578 protein_coding
ENSDARG00000079397 (cerkl)
ceramide kinase-like 		ENSDART00000110411 (cerkl-001) 45160248-45355573 protein_coding
CIL_0004C0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115232-ENSG00000188452 CGP 9606 2:181457202-181680665
GeneTranscriptPositionBiotype
ENSG00000115232 (ITGA4)
integrin, alpha 4 (antigen CD49D, alpha 4 subunit of VLA-4 receptor) 		ENST00000233573 (ITGA4-006) 181457428-181509805 protein_coding
ENST00000339307 (ITGA4-003) 181457207-181476218 protein_coding
ENST00000397033 (ITGA4-001) 181457225-181536187 protein_coding
ENST00000465522 (ITGA4-004) 181457404-181486309 retained_intron
ENST00000468948 (ITGA4-011) 181523335-181524365 retained_intron
ENST00000473002 (ITGA4-010) 181493034-181495832 retained_intron
ENST00000476089 (ITGA4-002) 181457202-181459391 retained_intron
ENST00000476824 (ITGA4-008) 181498572-181527450 retained_intron
ENST00000478440 (ITGA4-005) 181458241-181479716 processed_transcript
ENST00000484404 (ITGA4-007) 181457713-181475290 retained_intron
ENST00000490435 (ITGA4-009) 181498281-181511771 retained_intron
ENST00000614742 (ITGA4-201) 181457225-181535562 protein_coding
ENSG00000162992 (NEUROD1)
neuronal differentiation 1 		ENST00000295108 (NEUROD1-001) 181676467-181680876 protein_coding
ENST00000496876 (NEUROD1-003) 181673088-181680547 processed_transcript
CIL_0004C0_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027009-ENSMUSG00000075256 CGP 10090 2:79255426-79456785
GeneTranscriptPositionBiotype
ENSMUSG00000027009 (Itga4)
integrin alpha 4 		ENSMUST00000099972 (Itga4-001) 79255500-79333123 protein_coding
ENSMUST00000126312 (Itga4-005) 79255947-79292977 processed_transcript
ENSMUST00000135919 (Itga4-004) 79255721-79293273 processed_transcript
ENSMUST00000141094 (Itga4-003) 79255572-79273986 processed_transcript
ENSMUST00000155105 (Itga4-002) 79255426-79257852 processed_transcript
ENSMUSG00000034701 (Neurod1)
neurogenic differentiation 1 		ENSMUST00000041099 (Neurod1-001) 79452521-79456751 protein_coding
ENSMUSG00000075256 (Cerkl)
ceramide kinase-like 		ENSMUST00000099974 (Cerkl-002) 79331752-79428954 processed_transcript
ENSMUST00000123859 (Cerkl-004) 79332595-79428997 processed_transcript
ENSMUST00000130499 (Cerkl-009) 79354788-79370890 processed_transcript
ENSMUST00000143602 (Cerkl-003) 79332593-79428907 processed_transcript
ENSMUST00000143974 (Cerkl-001) 79332530-79428891 protein_coding
ENSMUST00000145766 (Cerkl-007) 79387516-79391139 processed_transcript
ENSMUST00000147402 (Cerkl-011) 79332502-79333682 processed_transcript
ENSMUST00000152413 (Cerkl-006) 79388848-79393034 processed_transcript
ENSMUST00000152549 (Cerkl-005) 79332593-79428891 processed_transcript
ENSMUST00000153602 (Cerkl-012) 79338569-79456785 processed_transcript
ENSMUST00000156731 (Cerkl-010) 79330543-79338603 protein_coding
ENSMUST00000156830 (Cerkl-008) 79343233-79370865 processed_transcript
ENSMUSG00000081284 (Gm13673)
predicted gene 13673 		ENSMUST00000122056 (Gm13673-001) 79359865-79360395 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004C0_0001ENSDARG00000061186ENSDART00000086963ENSDART00000149577ENSDARG00000079397ENSDART00000110411CIL_0004C0_0002ENSG00000115232ENST00000233573ENST00000339307ENST00000397033ENST00000465522ENST00000468948ENST00000473002ENST00000476089ENST00000476824ENST00000478440ENST00000484404ENST00000490435ENST00000614742ENSG00000162992ENST00000295108ENST00000496876CIL_0004C0_0003ENSMUSG00000027009ENSMUST00000099972ENSMUST00000126312ENSMUST00000135919ENSMUST00000141094ENSMUST00000155105ENSMUSG00000034701ENSMUST00000041099ENSMUSG00000075256ENSMUST00000099974ENSMUST00000123859ENSMUST00000130499ENSMUST00000143602ENSMUST00000143974ENSMUST00000145766ENSMUST00000147402ENSMUST00000152413ENSMUST00000152549ENSMUST00000153602ENSMUST00000156731ENSMUST00000156830ENSMUSG00000081284ENSMUST00000122056
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004C0_0001ENSDARG00000061186ENSDART00000086963ENSDART00000149577ENSDARG00000079397ENSDART00000110411CIL_0004C0_0002ENSG00000115232ENST00000233573ENST00000397033ENST00000476824ENST00000484404ENST00000614742ENSG00000162992ENST00000295108ENST00000496876CIL_0004C0_0003ENSMUSG00000027009ENSMUST00000099972ENSMUST00000141094ENSMUSG00000034701ENSMUST00000041099ENSMUSG00000075256ENSMUST00000099974ENSMUST00000130499ENSMUSG00000081284ENSMUST00000122056
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061186 ENSDART00000086963 N/A N/A N/A 0.680±0.27 N/A N/A 0.381±0.10 N/A 0.096±0.00 N/A 0.164±0.00 N/A N/A N/A
ENSDART00000149577 N/A N/A N/A 0.468±0.30 N/A N/A 0.351±0.12 N/A N/A N/A 0.181±0.00 N/A N/A N/A
ENSDARG00000079397 ENSDART00000110411 N/A N/A N/A 2.140±1.41 N/A N/A N/A N/A 0.035±0.00 N/A 0.083±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115232 ENST00000233573 N/A N/A 0.324±0.00 N/A N/A N/A 0.540±0.00 0.724±0.00 2.131±0.00 6.093±0.00 N/A 1.516±0.00 N/A N/A
ENST00000339307 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397033 0.411±0.00 5.097±0.00 0.135±0.00 0.130±0.00 0.402±0.00 1.229±0.90 N/A 0.626±0.09 N/A 5.379±0.89 N/A 0.306±0.05 1.132±0.34 N/A
ENST00000465522 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468948 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473002 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476824 N/A N/A N/A N/A N/A 4.201±0.00 N/A 1.636±0.00 N/A N/A 0.116±0.00 N/A N/A N/A
ENST00000478440 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.503±0.00 N/A N/A N/A
ENST00000490435 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614742 N/A N/A N/A N/A N/A 1.377±0.00 0.230±0.00 N/A N/A N/A N/A 1.676±0.27 3.272±0.00 0.384±0.00
ENSG00000162992 ENST00000295108 N/A N/A N/A 1.000±0.49 N/A 0.205±0.00 N/A N/A 0.050±0.00 N/A 0.038±0.00 N/A N/A 0.582±0.00
ENST00000496876 N/A N/A N/A 0.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027009 ENSMUST00000099972 1.030±0.52 0.314±0.11 1.293±0.18 1.023±0.23 4.605±1.27 1.149±0.30 0.499±0.19 0.536±0.09 5.215±5.94 3.610±0.48 0.569±0.17 0.932±0.42 0.874±0.39 0.133±0.02
ENSMUST00000126312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135919 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141094 N/A 0.407±0.07 N/A N/A N/A 1.678±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155105 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000034701 ENSMUST00000041099 N/A N/A N/A 8.040±4.56 N/A 1.759±0.43 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000075256 ENSMUST00000099974 2.689±0.00 0.300±0.00 2.047±0.00 N/A N/A 0.768±0.00 N/A N/A N/A N/A 0.548±0.18 1.021±0.00 N/A N/A
ENSMUST00000123859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.201±0.26
ENSMUST00000143602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000152549 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000081284 ENSMUST00000122056 N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A 0.093±0.12 N/A N/A N/A 0.074±0.09 0.075±0.00

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