C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyadenylate-binding protein-interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041314 Paip2-001 ENSMUSG00000037058 10090 + 18:35598617-35617186 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041314 41.940±2.30 47.582±3.64 96.887±1.09 71.816±34.06 40.704±4.19 31.132±4.71 52.129±2.91 40.931±2.65 47.984±25.45 55.438±3.81 53.192±1.69 55.497±17.97 46.706±19.87 71.490±6.58

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D0 CIL_0005D0_0002 CGP 18:35562146-35617186
CIL_000542 CIL_000542_0002 CGP 18:35598617-35627244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000900 ISO translation repressor activity, nucleic acid binding
GO:0003729 IDA mRNA binding
GO:0005737 IDA cytoplasm
GO:0006417 IMP regulation of translation
GO:0007283 IMP spermatogenesis
GO:0007613 IMP memory
GO:0008143 ISO poly(A) binding
GO:0017148 ISO negative regulation of translation
GO:1900271 IMP regulation of long-term synaptic potentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265192 PAIP2-001 protein_coding Homo_sapiens 0 1251
ENST00000394795 PAIP2-002 protein_coding Homo_sapiens 0 1016
ENST00000507415 PAIP2-006 retained_intron Homo_sapiens 0 261
ENST00000507755 PAIP2-004 protein_coding Homo_sapiens 0 510
ENST00000510080 PAIP2-003 protein_coding Homo_sapiens 0 1005
ENST00000510409 PAIP2-005 retained_intron Homo_sapiens 0 791
ENST00000511381 PAIP2-007 processed_transcript Homo_sapiens 0 416
ENST00000511706 PAIP2-008 protein_coding Homo_sapiens 0 427

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