C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 335
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041361 Zfp335-001 ENSMUSG00000039834 10090 - 2:164891882-164911757 protein_coding

Mus musculus EnsemblGRCm38

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041361
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041361 9.240±1.85 13.643±3.29 6.387±1.73 12.093±6.08 14.039±5.30 15.345±0.46 3.041±1.10 8.444±1.13 7.183±2.00 11.910±2.09 3.520±0.77 14.192±4.98 9.458±7.80 4.140±1.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006IV CIL_0006IV_0003 CGP 2:164839518-164894454
CIL_0006GO CIL_0006GO_0002 CGP 2:164879304-164911757
CIL_0007BJ CIL_0007BJ_0002 CGP 2:164891882-164955850

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000979 IDA RNA polymerase II core promoter sequence-specific DNA binding
GO:0001701 IMP in utero embryonic development
GO:0002052 IMP positive regulation of neuroblast proliferation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IMP brain development
GO:0010468 IDA regulation of gene expression
GO:0021895 IGI cerebral cortex neuron differentiation
GO:0035097 IDA histone methyltransferase complex
GO:0040029 ISS regulation of gene expression, epigenetic
GO:0044212 IDA transcription regulatory region DNA binding
GO:0046872 IEA metal ion binding
GO:0048812 IMP neuron projection morphogenesis
GO:0048854 IGI brain morphogenesis
GO:0050671 ISS positive regulation of lymphocyte proliferation
GO:0050767 IMP regulation of neurogenesis
GO:0050769 IEA positive regulation of neurogenesis
GO:0051569 IDA regulation of histone H3-K4 methylation
GO:0080182 ISS histone H3-K4 trimethylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322927 ZNF335-001 protein_coding Homo_sapiens 0 4148
ENST00000475002 ZNF335-004 processed_transcript Homo_sapiens 0 383
ENST00000476822 ZNF335-002 processed_transcript Homo_sapiens 0 750
ENST00000494955 ZNF335-003 processed_transcript Homo_sapiens 0 351

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