C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) II (DNA directed) polypeptide J
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041366 Polr2j-001 ENSMUSG00000039771 10090 + 5:136116631-136122947 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000041366
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000041366 38.644±5.45 18.786±3.56 51.783±10.95 41.501±23.71 23.166±4.49 21.997±2.20 24.185±2.91 36.539±3.22 52.105±42.89 18.538±3.42 29.537±2.11 36.180±14.04 41.418±23.52

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001055 IBA RNA polymerase II activity
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005665 IDA DNA-directed RNA polymerase II, core complex
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0030275 IEA LRR domain binding
GO:0046983 IEA protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292614 POLR2J-001 protein_coding Homo_sapiens 0 459
ENST00000326391 POLR2J4-002 processed_transcript Homo_sapiens 0 411
ENST00000333432 POLR2J2-201 protein_coding Homo_sapiens 0 405
ENST00000358438 POLR2J2-002 protein_coding Homo_sapiens 0 411
ENST00000379340 POLR2J3-003 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000393794 POLR2J-201 protein_coding Homo_sapiens 0 399
ENST00000418424 POLR2J4-003 transcribed_unprocessed_pseudogene Homo_sapiens 0 403
ENST00000443430 POLR2J3-015 processed_transcript Homo_sapiens 0 283
ENST00000464525 POLR2J3-002 nonsense_mediated_decay Homo_sapiens 0.00000000000002 86
ENST00000476151 POLR2J2-001 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000486319 POLR2J3-004 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000489144 POLR2J3-001 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000504101 POLR2J3-013 retained_intron Homo_sapiens 0 200
ENST00000504157 POLR2J3-006 processed_transcript Homo_sapiens 0.000000000000004 88
ENST00000506060 POLR2J3-014 processed_transcript Homo_sapiens 0 278
ENST00000507355 POLR2J3-009 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000508848 POLR2J3-011 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000508910 POLR2J3-016 processed_transcript Homo_sapiens 0 278
ENST00000511313 POLR2J3-005 protein_coding Homo_sapiens 0 198
ENST00000513438 POLR2J3-012 protein_coding Homo_sapiens 0 202
ENST00000513506 POLR2J3-010 protein_coding Homo_sapiens 0 198
ENST00000608621 POLR2J3-019 nonsense_mediated_decay Homo_sapiens 0 399
ENST00000613744 POLR2J3-202 protein_coding Homo_sapiens 0 405
ENST00000621093 POLR2J3-203 protein_coding Homo_sapiens 0 399

Loading