C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: E1A binding protein p400
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041558 Ep400-002 ENSMUSG00000029505 10090 - 5:110664373-110770527 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000041558
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000041558 4.609±1.13 3.786±0.87 2.258±0.00 2.716±0.00 0.792±0.17 1.628±0.00 1.371±0.56 0.548±0.14 6.565±3.48 2.109±0.52 14.198±3.50

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008NO CIL_0008NO_0002 VISTA 5:110598210-111198771

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000812 ISS Swr1 complex
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0004386 IEA helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0016607 IDA nuclear speck
GO:0035267 ISS NuA4 histone acetyltransferase complex
GO:0043967 ISS histone H4 acetylation
GO:0043968 ISS histone H2A acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000330386 EP400-004 protein_coding Homo_sapiens 0 942
ENST00000332441 EP400NL-004 nonsense_mediated_decay Homo_sapiens 0 773
ENST00000332482 EP400-003 protein_coding Homo_sapiens 0 1221
ENST00000333577 EP400-002 protein_coding Homo_sapiens 0 1201
ENST00000389560 EP400NL-005 protein_coding Homo_sapiens 0 767
ENST00000389561 EP400-201 protein_coding Homo_sapiens 0 3762
ENST00000389562 EP400-001 protein_coding Homo_sapiens 0 3762
ENST00000392352 EP400NL-001 protein_coding Homo_sapiens 0 586
ENST00000443539 EP400NL-008 protein_coding Homo_sapiens 0 586
ENST00000446190 EP400NL-006 nonsense_mediated_decay Homo_sapiens 0 867
ENST00000475841 EP400NL-007 processed_transcript Homo_sapiens 4e-34 152
ENST00000488030 EP400NL-003 processed_transcript Homo_sapiens 2e-35 154
ENST00000611739 EP400-006 retained_intron Homo_sapiens 0 573
ENST00000611841 EP400-008 retained_intron Homo_sapiens 0 1945
ENST00000616136 EP400-005 retained_intron Homo_sapiens 0 472

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