C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intraflagellar transport 172
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041565 Ift172-201 ENSMUSG00000038564 10090 - 5:31253280-31291114 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041565 7.019±1.40 3.237±1.11 6.434±0.08 13.159±7.26 4.752±0.75 3.324±0.39 4.772±0.26 5.506±0.57 1.825±0.35 8.534±0.34 5.235±0.26 10.722±4.33 2.921±1.31 60.726±16.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001DG CIL_0001DG_0002 CGP 5:31251691-31291114
CIL_00010D CIL_00010D_0002 CGP 5:31253280-31295877

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001841 IMP neural tube formation
GO:0001843 IMP neural tube closure
GO:0001947 IMP heart looping
GO:0005515 IPI protein binding
GO:0005929 IDA cilium
GO:0005930 IBA axoneme
GO:0007219 IMP Notch signaling pathway
GO:0007224 IMP smoothened signaling pathway
GO:0007368 IMP determination of left/right symmetry
GO:0007420 IMP brain development
GO:0007507 IMP heart development
GO:0008544 IMP epidermis development
GO:0008589 IMP regulation of smoothened signaling pathway
GO:0009953 IMP dorsal/ventral pattern formation
GO:0016485 IMP protein processing
GO:0021522 IMP spinal cord motor neuron differentiation
GO:0021915 IMP neural tube development
GO:0030992 IDA intraciliary transport particle B
GO:0031122 IMP cytoplasmic microtubule organization
GO:0031514 ISO motile cilium
GO:0031982 IEA vesicle
GO:0036064 IBA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0045880 IMP positive regulation of smoothened signaling pathway
GO:0050680 IMP negative regulation of epithelial cell proliferation
GO:0060021 IMP palate development
GO:0060173 IMP limb development
GO:0060271 IMP cilium morphogenesis
GO:0060348 IMP bone development
GO:0061525 IMP hindgut development
GO:0070986 IMP left/right axis specification
GO:0097225 IDA sperm midpiece
GO:0097228 IDA sperm principal piece
GO:0097598 IDA sperm cytoplasmic droplet

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260570 IFT172-001 protein_coding Homo_sapiens 0 6698
ENST00000359466 IFT172-004 protein_coding Homo_sapiens 0 2097
ENST00000416524 IFT172-005 protein_coding Homo_sapiens 0 1958
ENST00000420854 IFT172-016 nonsense_mediated_decay Homo_sapiens 0 627
ENST00000443889 IFT172-012 protein_coding Homo_sapiens 0 658
ENST00000450564 IFT172-010 nonsense_mediated_decay Homo_sapiens 0 749
ENST00000463613 IFT172-007 retained_intron Homo_sapiens 0 231
ENST00000475476 IFT172-006 retained_intron Homo_sapiens 0 586
ENST00000476264 IFT172-002 retained_intron Homo_sapiens 0 869
ENST00000489492 IFT172-008 retained_intron Homo_sapiens 0 283
ENST00000494163 IFT172-014 retained_intron Homo_sapiens 0 483
ENST00000507184 IFT172-017 retained_intron Homo_sapiens 0 3738
ENST00000509128 IFT172-019 nonsense_mediated_decay Homo_sapiens 0 1940
ENST00000511842 IFT172-018 retained_intron Homo_sapiens 0 2261

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