C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TAF4A RNA polymerase II, TATA box binding protein (TBP)-associated factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041618 Taf4a-201 ENSMUSG00000039117 10090 - 2:179912146-179976646 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENSMUST00000041618
Transcript ID Colon
ENSMUST00000041618 1.486±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000693 CIL_000693_0003 CGP 2:179442431-179976646
CIL_0001DN CIL_0001DN_0002 CGP 2:179912146-180035465

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001541 IMP ovarian follicle development
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005669 ISO transcription factor TFIID complex
GO:0005737 IEA cytoplasm
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006367 IEA transcription initiation from RNA polymerase II promoter
GO:0033276 IEA transcription factor TFTC complex
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:0071339 IEA MLL1 complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252996 TAF4-001 protein_coding Homo_sapiens 0 3295
ENST00000436129 TAF4-009 retained_intron Homo_sapiens 0 1899
ENST00000474089 TAF4-006 protein_coding Homo_sapiens 0 198
ENST00000488539 TAF4-004 protein_coding Homo_sapiens 0 532
ENST00000608458 TAF4-007 retained_intron Homo_sapiens 0 477
ENST00000608887 TAF4-010 processed_transcript Homo_sapiens 0 298

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