C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041639 Syne1-201 ENSMUSG00000096054 10090 - 10:5336949-5550692 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041639
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041639 0.156±0.12 0.470±0.14 0.024±0.00 0.229±0.10 0.208±0.08 0.283±0.08 0.205±0.07 0.077±0.03 0.904±0.34 0.044±0.02 0.233±0.10 0.012±0.00 0.132±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EI CIL_0005EI_0002 CGP 10:4611593-5550692

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IEA actin binding
GO:0005515 IPI protein binding
GO:0005521 IEA lamin binding
GO:0005634 IEA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IEA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0007030 IEA Golgi organization
GO:0030017 ISA sarcomere
GO:0031965 IEA nuclear membrane
GO:0034993 IEA SUN-KASH complex
GO:0040023 IMP establishment of nucleus localization
GO:0042692 IEA muscle cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0045211 IEA postsynaptic membrane
GO:0051015 IMP actin filament binding
GO:0090286 IEA cytoskeletal anchoring at nuclear membrane
GO:0090292 IEA nuclear matrix anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000341594 SYNE1-201 protein_coding Homo_sapiens 0 1531
ENST00000367248 SYNE1-009 protein_coding Homo_sapiens 0 4091
ENST00000367253 SYNE1-010 protein_coding Homo_sapiens 0 3096
ENST00000367255 SYNE1-001 protein_coding Homo_sapiens 0 3096
ENST00000413186 SYNE1-029 protein_coding Homo_sapiens 0 3162
ENST00000423061 SYNE1-002 protein_coding Homo_sapiens 0 3096
ENST00000461872 SYNE1-014 retained_intron Homo_sapiens 0 3901
ENST00000466159 SYNE1-021 protein_coding Homo_sapiens 0 1371
ENST00000537750 SYNE1-030 protein_coding Homo_sapiens 0 1849
ENST00000610489 SYNE1-203 protein_coding Homo_sapiens 0 929

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