C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spectrin repeat containing, nuclear envelope 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000367255 SYNE1-001 ENSG00000131018 9606 - 6:152121684-152637399 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungOvaryENST00000367255
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENST00000367255 1.005±0.00 4.668±0.00 2.303±0.40 1.040±0.43 1.086±0.00 1.404±0.47 1.567±0.00 4.708±0.00 3.498±2.49 1.055±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005EH CIL_0005EH_0001 CGP 6:151494030-152129619
CIL_0005EI CIL_0005EI_0001 CGP 6:151656691-152637801
CIL_0002QH CIL_0002QH_0002 CGP 6:152121684-152724567

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003779 IDA actin binding
GO:0005515 IPI:IEA protein binding
GO:0005521 IPI lamin binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005856 IEA cytoskeleton
GO:0006810 IEA transport
GO:0006997 NAS nucleus organization
GO:0007030 IDA Golgi organization
GO:0008219 IEA cell death
GO:0016021 IDA:IEA integral component of membrane
GO:0030017 IDA sarcomere
GO:0031965 IDA nuclear membrane
GO:0034993 IDA SUN-KASH complex
GO:0040023 IEA establishment of nucleus localization
GO:0042626 IEA ATPase activity, coupled to transmembrane movement of substances
GO:0042692 IDA muscle cell differentiation
GO:0042803 ISS protein homodimerization activity
GO:0044822 IDA poly(A) RNA binding
GO:0045211 IDA postsynaptic membrane
GO:0051015 ISS actin filament binding
GO:0055085 IEA transmembrane transport
GO:0090286 IDA cytoskeletal anchoring at nuclear membrane
GO:0090292 IDA nuclear matrix anchoring at nuclear membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000041639 Syne1-201 protein_coding Mus_musculus 0 3096
ENSMUST00000095899 Syne1-202 protein_coding Mus_musculus 0 3055

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