C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005EI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000091831-ENSG00000131018 CGP 9606 6:151656691-152637801
GeneTranscriptPositionBiotype
ENSG00000091831 (ESR1)
estrogen receptor 1 		ENST00000206249 (ESR1-001) 151807551-152103274 protein_coding
ENST00000338799 (ESR1-002) 151804431-152099053 protein_coding
ENST00000404742 (ESR1-004) 151690496-151808166 protein_coding
ENST00000406599 (ESR1-009) 151807679-152098978 protein_coding
ENST00000415488 (ESR1-010) 151880657-152061059 protein_coding
ENST00000427531 (ESR1-008) 151809107-152129619 protein_coding
ENST00000440973 (ESR1-201) 151690496-152103274 protein_coding
ENST00000443427 (ESR1-202) 151807319-152103274 protein_coding
ENST00000446550 (ESR1-007) 151807196-151808259 protein_coding
ENST00000456483 (ESR1-203) 151807679-152098978 protein_coding
ENST00000473497 (ESR1-005) 151656691-151807857 processed_transcript
ENST00000482101 (ESR1-003) 151944172-151984165 processed_transcript
ENST00000488573 (ESR1-006) 151808105-151811278 processed_transcript
ENSG00000226193 (RP3-398G3.5)
 ENST00000458194 (RP3-398G3.5-001) 152402398-152404966 antisense
ENSG00000233464 (NANOGP11)
Nanog homeobox pseudogene 11 		ENST00000449282 (NANOGP11-001) 152545930-152546984 antisense
CIL_0005EI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019768-ENSMUSG00000096054 CGP 10090 10:4611593-5550692
GeneTranscriptPositionBiotype
ENSMUSG00000019768 (Esr1)
estrogen receptor 1 (alpha) 		ENSMUST00000067086 (Esr1-002) 4612021-5003761 protein_coding
ENSMUST00000105588 (Esr1-007) 4710155-4967336 protein_coding
ENSMUST00000105589 (Esr1-004) 4710155-5002024 protein_coding
ENSMUST00000105590 (Esr1-001) 4611989-5005614 protein_coding
ENSMUST00000127145 (Esr1-010) 4712651-4784824 processed_transcript
ENSMUST00000127934 (Esr1-009) 4922970-4997930 processed_transcript
ENSMUST00000133985 (Esr1-008) 4611996-4671884 retained_intron
ENSMUST00000137012 (Esr1-006) 4936526-5001656 processed_transcript
ENSMUST00000138828 (Esr1-003) 4612013-4857509 retained_intron
ENSMUST00000149195 (Esr1-005) 4611593-4893083 processed_transcript
ENSMUSG00000093189 (Gm25694)
predicted gene, 25694 		ENSMUST00000175448 (Gm25694-201) 5036175-5036456 misc_RNA
ENSMUSG00000094906 (Gm23573)
predicted gene, 23573 		ENSMUST00000104408 (Gm23573-201) 5357173-5357279 snRNA
ENSMUSG00000096054 (Syne1)
spectrin repeat containing, nuclear envelope 1 		ENSMUST00000041639 (Syne1-201) 5336949-5550692 protein_coding
ENSMUST00000095899 (Syne1-202) 5020203-5069063 protein_coding
ENSMUSG00000096553 (Gm10097)
predicted gene 10097 		ENSMUST00000180100 (Gm10097-201) 5069192-5071975 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005EI_0001ENSG00000091831ENST00000206249ENST00000338799ENST00000404742ENST00000406599ENST00000415488ENST00000427531ENST00000440973ENST00000443427ENST00000446550ENST00000456483ENST00000473497ENST00000482101ENST00000488573ENSG00000226193ENST00000458194ENSG00000233464ENST00000449282CIL_0005EI_0002ENSMUSG00000019768ENSMUST00000067086ENSMUST00000105588ENSMUST00000105589ENSMUST00000105590ENSMUST00000127145ENSMUST00000127934ENSMUST00000133985ENSMUST00000137012ENSMUST00000138828ENSMUST00000149195ENSMUSG00000093189ENSMUST00000175448ENSMUSG00000094906ENSMUST00000104408ENSMUSG00000096054ENSMUST00000041639ENSMUST00000095899ENSMUSG00000096553ENSMUST00000180100
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005EI_0001ENSG00000091831ENST00000206249ENST00000338799ENST00000404742ENST00000406599ENST00000415488ENST00000427531ENST00000440973ENST00000443427ENSG00000226193ENST00000458194ENSG00000233464ENST00000449282CIL_0005EI_0002ENSMUSG00000019768ENSMUST00000067086ENSMUST00000105589ENSMUST00000105590ENSMUST00000127934ENSMUST00000137012ENSMUST00000138828ENSMUST00000149195ENSMUSG00000093189ENSMUST00000175448ENSMUSG00000094906ENSMUST00000104408ENSMUSG00000096054ENSMUST00000041639ENSMUST00000095899ENSMUSG00000096553ENSMUST00000180100
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000091831 ENST00000206249 0.563±0.00 0.217±0.00 N/A N/A N/A N/A N/A N/A N/A 0.338±0.00 N/A 4.120±3.84 N/A N/A
ENST00000338799 N/A N/A N/A N/A 0.536±0.00 N/A N/A N/A N/A 0.418±0.00 N/A N/A N/A N/A
ENST00000404742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 N/A
ENST00000406599 N/A N/A N/A N/A N/A N/A 0.520±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000415488 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.610±0.00 N/A
ENST00000427531 0.125±0.00 0.273±0.00 N/A 0.187±0.06 0.328±0.00 0.410±0.00 0.142±0.00 N/A 0.414±0.00 N/A 0.029±0.00 0.024±0.00 N/A N/A
ENST00000440973 N/A N/A N/A N/A 0.483±0.00 N/A 0.088±0.00 2.888±0.00 1.991±0.00 0.178±0.00 N/A 1.506±1.07 N/A N/A
ENST00000443427 0.276±0.00 N/A N/A N/A 0.935±0.00 0.266±0.00 0.188±0.00 0.775±0.00 0.449±0.00 N/A 0.807±0.00 0.641±0.40 0.249±0.03 N/A
ENST00000446550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000473497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482101 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000226193 ENST00000458194 N/A N/A N/A N/A N/A N/A N/A 0.177±0.00 0.858±0.00 N/A N/A N/A N/A 0.033±0.00
ENSG00000233464 ENST00000449282 N/A N/A 0.093±0.00 0.128±0.00 N/A N/A 0.125±0.00 N/A 0.322±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019768 ENSMUST00000067086 N/A N/A N/A 0.115±0.00 N/A 0.362±0.14 N/A N/A 0.012±0.00 N/A N/A N/A N/A 0.287±0.00
ENSMUST00000105588 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000105589 12.704±8.72 3.030±0.64 N/A 0.042±0.01 6.510±1.75 0.349±0.07 0.123±0.03 N/A 0.035±0.01 N/A N/A 21.855±7.99 0.157±0.01 0.449±0.04
ENSMUST00000105590 18.243±16.87 2.830±1.49 0.999±0.18 0.038±0.01 5.729±1.49 0.608±0.07 0.262±0.09 1.983±0.26 4.614±3.18 0.505±0.21 1.174±0.68 11.843±4.05 0.175±0.00 0.327±0.05
ENSMUST00000127145 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000127934 N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133985 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137012 33.339±0.00 N/A N/A N/A N/A N/A 0.333±0.04 2.079±0.00 N/A N/A N/A N/A 0.495±0.00 0.633±0.06
ENSMUST00000138828 N/A 2.617±0.88 N/A N/A N/A 0.425±0.00 N/A N/A 0.028±0.00 N/A N/A N/A N/A N/A
ENSMUST00000149195 N/A N/A N/A N/A N/A N/A N/A N/A 0.024±0.01 0.229±0.00 N/A N/A N/A N/A
ENSMUSG00000093189 ENSMUST00000175448 N/A N/A 0.142±0.00 1.935±1.45 0.824±0.00 N/A 0.298±0.00 N/A 0.081±0.01 N/A N/A 0.679±0.06 0.430±0.30 N/A
ENSMUSG00000094906 ENSMUST00000104408 N/A N/A N/A 34.304±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000096054 ENSMUST00000041639 0.156±0.12 0.470±0.14 N/A 0.024±0.00 0.229±0.10 0.208±0.08 0.283±0.08 0.205±0.07 0.077±0.03 0.904±0.34 0.044±0.02 0.233±0.10 0.012±0.00 0.132±0.05
ENSMUST00000095899 8.529±2.00 3.816±0.50 5.786±0.00 2.492±0.49 5.926±2.01 6.301±0.90 8.809±2.12 2.239±1.55 2.313±1.25 14.226±0.86 5.046±2.98 5.091±1.65 1.127±0.00 1.005±0.29
ENSMUSG00000096553 ENSMUST00000180100 0.058±0.02 0.129±0.03 0.039±0.00 0.039±0.02 0.098±0.05 0.078±0.03 0.169±0.10 0.031±0.01 0.036±0.02 0.147±0.04 0.035±0.02 0.086±0.06 0.017±0.01 0.020±0.01

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