C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDX1 C-terminal inhibiting factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041643 Pcif1-001 ENSMUSG00000039849 10090 + 2:164879365-164894454 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041643
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041643 7.121±1.29 12.155±2.62 4.673±0.74 8.500±2.80 10.108±4.19 9.595±1.65 3.792±0.51 7.506±0.60 3.956±1.21 13.644±0.43 4.729±1.03 9.945±2.65 3.618±2.33 4.522±0.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006IV CIL_0006IV_0003 CGP 2:164839518-164894454
CIL_0006GO CIL_0006GO_0002 CGP 2:164879304-164911757

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005634 IEA nucleus
GO:0010923 ISS negative regulation of phosphatase activity
GO:0015630 IEA microtubule cytoskeleton
GO:0045171 IEA intercellular bridge

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000322927 ZNF335-001 protein_coding Homo_sapiens 0 316
ENST00000372409 PCIF1-001 protein_coding Homo_sapiens 0 3147
ENST00000479348 PCIF1-002 protein_coding Homo_sapiens 0 1007
ENST00000616084 PCIF1-003 processed_transcript Homo_sapiens 0 217

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