C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility 2, class II, locus Mb2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000041982 H2-DMb2-001 ENSMUSG00000037548 10090 + 17:34145313-34151553 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000041982
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000041982 1.767±0.53 0.715±0.34 2.152±0.25 0.231±0.02 35.473±16.36 5.210±0.88 0.800±0.62 2.403±1.44 0.455±0.21 9.347±2.61 0.916±1.64 1.205±0.69 0.288±0.26 0.120±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001PK CIL_0001PK_0005 CGP 17:34143307-34160230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002474 IEA antigen processing and presentation of peptide antigen via MHC class I
GO:0005515 IPI protein binding
GO:0005764 IDA lysosome
GO:0005765 IDA lysosomal membrane
GO:0005770 IDA late endosome
GO:0005771 IDA multivesicular body
GO:0006955 IEA immune response
GO:0010008 IDA endosome membrane
GO:0016021 IDA integral component of membrane
GO:0019882 IDA antigen processing and presentation
GO:0019886 IDA antigen processing and presentation of exogenous peptide antigen via MHC class II
GO:0042612 IEA MHC class I protein complex
GO:0042613 IEA MHC class II protein complex
GO:0051085 IDA chaperone mediated protein folding requiring cofactor

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000383231 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000395312 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000412948 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000413038 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000413617 HLA-DMB-002 protein_coding Homo_sapiens 0 544
ENST00000413696 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000414017 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000418107 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000418759 HLA-DMB-002 protein_coding Homo_sapiens 0 544
ENST00000421456 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000424822 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000424874 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000428420 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000428864 HLA-DMB-002 protein_coding Homo_sapiens 0 544
ENST00000430115 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000433242 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000435204 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000437382 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000437583 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000438310 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000438510 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000439344 HLA-DMB-002 protein_coding Homo_sapiens 0 544
ENST00000440078 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000440269 HLA-DMB-007 protein_coding Homo_sapiens 0 235
ENST00000441177 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000447454 HLA-DMB-002 protein_coding Homo_sapiens 0 544
ENST00000448798 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000450897 HLA-DMB-001 protein_coding Homo_sapiens 0 556
ENST00000451921 HLA-DMB-006 protein_coding Homo_sapiens 0 348
ENST00000452407 HLA-DMB-002 protein_coding Homo_sapiens 0 544
ENST00000456428 HLA-DMB-002 protein_coding Homo_sapiens 0 544
ENST00000461570 HLA-DMB-003 retained_intron Homo_sapiens 0 246
ENST00000463532 HLA-DMB-003 retained_intron Homo_sapiens 0 246
ENST00000466737 HLA-DMB-003 retained_intron Homo_sapiens 0 246
ENST00000476119 HLA-DMB-003 retained_intron Homo_sapiens 0 246
ENST00000480557 HLA-DMB-003 retained_intron Homo_sapiens 0 246
ENST00000482267 HLA-DMB-003 retained_intron Homo_sapiens 0 246
ENST00000487546 HLA-DMB-003 retained_intron Homo_sapiens 0 246
ENST00000498020 HLA-DMB-003 retained_intron Homo_sapiens 0 246

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