C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 103, member A1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042166 Fam103a1-001 ENSMUSG00000038646 10090 + 7:81762925-81769491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042166
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042166 7.120±2.54 4.325±1.34 26.469±11.19 22.175±10.64 5.194±1.56 8.692±1.98 6.761±0.79 15.667±1.88 17.481±6.91 13.353±0.71 12.360±1.07 6.899±1.31 14.459±8.63 15.450±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00026F CIL_00026F_0002 CGP 7:81600481-81769491
CIL_00026I CIL_00026I_0002 CGP 7:81762925-81789478

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA:ISS RNA binding
GO:0005634 ISS nucleus
GO:0005845 IEA:ISS mRNA cap binding complex
GO:0006370 ISS 7-methylguanosine mRNA capping
GO:0032259 IEA:ISS methylation
GO:0036031 ISS recruitment of mRNA capping enzyme to RNA polymerase II holoenzyme complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304191 FAM103A1-001 protein_coding Homo_sapiens 0 483
ENST00000424552 RP11-671E7.1-001 processed_pseudogene Homo_sapiens 0 279
ENST00000444122 FAM103A2P-001 processed_pseudogene Homo_sapiens 0 361
ENST00000448432 RP11-453O22.1-001 processed_pseudogene Homo_sapiens 0 263
ENST00000510873 C15orf40-005 protein_coding Homo_sapiens 3e-18 95
ENST00000538348 C15orf40-006 protein_coding Homo_sapiens 0 198

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