C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: quaking
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042296 Qk-202 ENSMUSG00000062078 10090 - 17:10210179-10319361 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042296 5.518±1.75 2.677±1.40 2.380±0.00 9.856±3.30 5.029±1.59 0.636±0.08 7.637±0.96 2.302±0.39 2.230±0.60 14.428±3.77 4.460±0.00 3.174±0.83 3.679±1.60 2.499±1.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T3 CIL_0007T3_0002 VISTA 17:9749210-10354334
CIL_0007W0 CIL_0007W0_0002 VISTA 17:10172540-10773972

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001570 IMP vasculogenesis
GO:0003723 TAS RNA binding
GO:0003729 IDA mRNA binding
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0006397 IEA mRNA processing
GO:0006417 IEA regulation of translation
GO:0007286 IGI spermatid development
GO:0008366 IMP axon ensheathment
GO:0008380 IEA RNA splicing
GO:0010628 IMP positive regulation of gene expression
GO:0017124 IEA SH3 domain binding
GO:0042552 IMP myelination
GO:0042692 IMP muscle cell differentiation
GO:0042759 IMP long-chain fatty acid biosynthetic process
GO:0051028 IEA mRNA transport
GO:0061158 IDA 3'-UTR-mediated mRNA destabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000018737 qkib-201 protein_coding Danio_rerio 0 712
ENSDART00000131553 qkib-002 protein_coding Danio_rerio 0 305
ENST00000275262 QKI-003 protein_coding Homo_sapiens 0 2137
ENST00000361195 QKI-006 protein_coding Homo_sapiens 0 1399
ENST00000361752 QKI-001 protein_coding Homo_sapiens 0 1943
ENST00000361758 QKI-010 nonsense_mediated_decay Homo_sapiens 0 1943
ENST00000392127 QKI-004 protein_coding Homo_sapiens 0 1978
ENST00000424802 QKI-007 protein_coding Homo_sapiens 0 1435
ENST00000453779 QKI-002 protein_coding Homo_sapiens 0 1943
ENST00000537041 QKI-016 protein_coding Homo_sapiens 0 798
ENST00000537124 QKI-013 protein_coding Homo_sapiens 0 281
ENST00000537883 QKI-017 protein_coding Homo_sapiens 0 845
ENST00000540719 QKI-018 retained_intron Homo_sapiens 0 909
ENST00000541696 QKI-019 retained_intron Homo_sapiens 0 370
ENST00000544361 QKI-020 protein_coding Homo_sapiens 0 676
ENST00000544436 QKI-012 protein_coding Homo_sapiens 0 540
ENST00000544823 QKI-014 protein_coding Homo_sapiens 0 869
ENST00000545346 QKI-015 nonsense_mediated_decay Homo_sapiens 0 237
ENST00000545607 QKI-011 nonsense_mediated_decay Homo_sapiens 0 872

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