C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: antigenic determinant of rec-A protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042512 Kin-001 ENSMUSG00000037262 10090 + 2:10080624-10092806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042512
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042512 1.342±0.19 0.533±0.22 6.725±0.12 5.695±0.90 1.058±0.43 0.913±0.03 1.108±0.35 1.119±0.24 6.453±2.09 0.994±0.13 2.243±0.51 4.202±5.20 15.169±10.52 2.560±3.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000PV CIL_0000PV_0002 CGP 2:10056016-10092806
CIL_0002F8 CIL_0002F8_0002 CGP 2:10080593-10131396

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003690 IDA double-stranded DNA binding
GO:0003723 ISS RNA binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006260 IDA DNA replication
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0006397 IEA mRNA processing
GO:0006974 IEP cellular response to DNA damage stimulus
GO:0016363 ISS nuclear matrix
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000379562 KIN-001 protein_coding Homo_sapiens 0 1408
ENST00000463666 KIN-003 processed_transcript Homo_sapiens 0 536
ENST00000471320 KIN-004 retained_intron Homo_sapiens 0 536
ENST00000498098 KIN-005 nonsense_mediated_decay Homo_sapiens 0 335

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