C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Sec23 interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000042942 Sec23ip-201 ENSMUSG00000055319 10090 + 7:128744870-128784836 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000042942
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000042942 10.833±2.39 18.433±0.79 8.157±0.20 7.059±2.48 12.046±4.72 7.682±4.86 4.011±1.54 8.452±2.79 6.989±2.52 12.589±1.58 4.011±0.28 16.956±6.39 12.635±1.80 24.798±3.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047E CIL_00047E_0003 CGP 7:128696441-128784836
CIL_0005R0 CIL_0005R0_0002 CGP 7:128744870-129391307

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001675 IMP acrosome assembly
GO:0005801 IDA cis-Golgi network
GO:0007286 IMP spermatid development
GO:0007338 IMP single fertilization
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0048471 IDA perinuclear region of cytoplasm
GO:0070971 IDA endoplasmic reticulum exit site
GO:0097038 IDA perinuclear endoplasmic reticulum

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087553 sec23ip-001 protein_coding Danio_rerio 0 431
ENST00000369075 SEC23IP-001 protein_coding Homo_sapiens 0 3175
ENST00000442952 SEC23IP-006 protein_coding Homo_sapiens 0 472
ENST00000446561 SEC23IP-003 protein_coding Homo_sapiens 0 396
ENST00000462222 SEC23IP-005 processed_transcript Homo_sapiens 0 366
ENST00000470478 SEC23IP-004 processed_transcript Homo_sapiens 6e-40 167
ENST00000475542 SEC23IP-007 processed_transcript Homo_sapiens 0 544
ENST00000543134 SEC23IP-201 protein_coding Homo_sapiens 0 1417

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