C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofascin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000043189 Nfasc-001 ENSMUSG00000026442 10090 - 1:132569249-132707326 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000043189
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000043189 0.043±0.01 0.206±0.10 0.207±0.00 0.040±0.00 0.030±0.01 0.047±0.03 0.029±0.01 0.101±0.06 0.161±0.08 0.019±0.01 0.044±0.02

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002175 IMP protein localization to paranode region of axon
GO:0005886 IDA plasma membrane
GO:0007411 IDA axon guidance
GO:0007422 IEA peripheral nervous system development
GO:0019226 IMP transmission of nerve impulse
GO:0030424 IDA axon
GO:0030913 IMP paranodal junction assembly
GO:0033010 IDA paranodal junction
GO:0033270 IDA paranode region of axon
GO:0034113 IGI heterotypic cell-cell adhesion
GO:0045162 IMP clustering of voltage-gated sodium channels
GO:0050808 IMP synapse organization
GO:0071205 IMP protein localization to juxtaparanode region of axon
GO:0086080 IGI protein binding involved in heterotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000339876 NFASC-201 protein_coding Homo_sapiens 0 2309
ENST00000360049 NFASC-202 protein_coding Homo_sapiens 0 3788
ENST00000367173 NFASC-006 protein_coding Homo_sapiens 0 2185
ENST00000401399 NFASC-001 protein_coding Homo_sapiens 0 2303
ENST00000403080 NFASC-003 protein_coding Homo_sapiens 0 2311
ENST00000404076 NFASC-012 protein_coding Homo_sapiens 0 4826
ENST00000404907 NFASC-010 protein_coding Homo_sapiens 0 3880
ENST00000404977 NFASC-002 processed_transcript Homo_sapiens 0 1452
ENST00000413225 NFASC-017 protein_coding Homo_sapiens 0 392
ENST00000425360 NFASC-004 protein_coding Homo_sapiens 0 1123
ENST00000430393 NFASC-011 protein_coding Homo_sapiens 0 2433
ENST00000447819 NFASC-007 protein_coding Homo_sapiens 0 880
ENST00000468328 NFASC-015 processed_transcript Homo_sapiens 0 303
ENST00000471392 NFASC-016 processed_transcript Homo_sapiens 0 767
ENST00000492085 NFASC-008 processed_transcript Homo_sapiens 0 274
ENST00000495396 NFASC-005 processed_transcript Homo_sapiens 0 883
ENST00000503221 NFASC-023 retained_intron Homo_sapiens 0 883
ENST00000504149 NFASC-025 processed_transcript Homo_sapiens 0 381
ENST00000504476 NFASC-021 nonsense_mediated_decay Homo_sapiens 0 2248
ENST00000512826 NFASC-022 retained_intron Homo_sapiens 0 3166
ENST00000513543 NFASC-018 protein_coding Homo_sapiens 0 3696
ENST00000514644 NFASC-020 retained_intron Homo_sapiens 0 933
ENST00000539706 NFASC-203 protein_coding Homo_sapiens 0 3880

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