C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofascin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000339876 NFASC-201 ENSG00000163531 9606 + 1:204828654-205022821 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartOvaryENST00000339876
Transcript ID Brain Colon Heart Ovary
ENST00000339876 4.069±0.00 0.507±0.00 0.887±0.00 2.198±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057C CIL_00057C_0002 CGP 1:204828651-205078499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002175 IEA protein localization to paranode region of axon
GO:0005515 IPI:IEA protein binding
GO:0005622 ISS intracellular
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007411 TAS axon guidance
GO:0007422 IEA:ISS peripheral nervous system development
GO:0016021 IEA integral component of membrane
GO:0019226 IEA transmission of nerve impulse
GO:0030424 IEA axon
GO:0030913 IEA paranodal junction assembly
GO:0033010 IEA paranodal junction
GO:0033268 ISS node of Ranvier
GO:0033270 IEA paranode region of axon
GO:0034113 IEA heterotypic cell-cell adhesion
GO:0042552 ISS myelination
GO:0043194 ISS axon initial segment
GO:0045162 IEA clustering of voltage-gated sodium channels
GO:0050808 IEA synapse organization
GO:0070062 IDA extracellular vesicular exosome
GO:0071205 IEA protein localization to juxtaparanode region of axon
GO:0086080 IEA protein binding involved in heterotypic cell-cell adhesion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094569 Nfasc-003 protein_coding Mus_musculus 0 5197
ENSMUST00000187861 Nfasc-004 protein_coding Mus_musculus 0 3225
ENSMUST00000188307 Nfasc-002 protein_coding Mus_musculus 0 3038
ENSMUST00000043189 Nfasc-001 protein_coding Mus_musculus 0 2309
ENSMUST00000186389 Nfasc-006 protein_coding Mus_musculus 0 2263
ENSMUST00000163770 Nfasc-005 protein_coding Mus_musculus 0 1452
ENSMUST00000186539 Nfasc-013 retained_intron Mus_musculus 0 520
ENSMUST00000191294 Nfasc-008 retained_intron Mus_musculus 0 486

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