C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurofascin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000401399 NFASC-001 ENSG00000163531 9606 + 1:204920632-205022822 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLungMuscleOvaryTestisENST00000401399
Transcript ID Adipose Adrenal Brain Breast Colon Lung Muscle Ovary Testis
ENST00000401399 0.583±0.00 1.628±0.00 7.535±0.00 0.528±0.01 1.879±0.00 1.876±0.00 0.723±0.00 1.173±0.96 1.919±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057C CIL_00057C_0002 CGP 1:204828651-205078499

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005622 ISS intracellular
GO:0005886 TAS plasma membrane
GO:0005925 IDA focal adhesion
GO:0007411 TAS axon guidance
GO:0007422 IEA:ISS peripheral nervous system development
GO:0016021 IEA integral component of membrane
GO:0033268 ISS node of Ranvier
GO:0042552 ISS myelination
GO:0043194 ISS axon initial segment
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000094569 Nfasc-003 protein_coding Mus_musculus 0 5097
ENSMUST00000187861 Nfasc-004 protein_coding Mus_musculus 0 3219
ENSMUST00000188307 Nfasc-002 protein_coding Mus_musculus 0 3038
ENSMUST00000043189 Nfasc-001 protein_coding Mus_musculus 0 2303
ENSMUST00000186389 Nfasc-006 protein_coding Mus_musculus 0 2263
ENSMUST00000163770 Nfasc-005 protein_coding Mus_musculus 0 1452
ENSMUST00000186539 Nfasc-013 retained_intron Mus_musculus 0 520
ENSMUST00000191294 Nfasc-008 retained_intron Mus_musculus 0 486

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