C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: pericentriolar material 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045218 Pcm1-201 ENSMUSG00000031592 10090 + 8:41239759-41334086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045218
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045218 2.453±1.24 1.478±0.36 6.973±0.29 14.739±2.93 2.005±0.14 1.334±0.33 2.569±0.23 2.036±0.79 2.540±1.60 2.905±1.56 3.841±0.68 4.692±3.94 5.584±2.68 4.603±0.79

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004EN CIL_0004EN_0002 CGP 8:41191434-41334086
CIL_000072 CIL_000072_0003 CGP 8:41239759-41374773

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000242 IDA pericentriolar material
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0016020 IEA membrane
GO:0022027 IMP interkinetic nuclear migration
GO:0031122 IEA cytoplasmic microtubule organization
GO:0031965 IEA nuclear membrane
GO:0034451 IDA centriolar satellite
GO:0034453 IMP microtubule anchoring
GO:0034454 IMP microtubule anchoring at centrosome
GO:0035735 ISS intraciliary transport involved in cilium morphogenesis
GO:0036064 IDA ciliary basal body
GO:0042384 ISS cilium assembly
GO:0043234 ISO protein complex
GO:0050768 IMP negative regulation of neurogenesis
GO:0051297 IEA centrosome organization
GO:0071539 IMP protein localization to centrosome
GO:0090316 ISS positive regulation of intracellular protein transport
GO:0097150 IMP neuronal stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000325083 PCM1-001 protein_coding Homo_sapiens 0 7516
ENST00000327578 PCM1-201 protein_coding Homo_sapiens 0 4647
ENST00000517545 PCM1-006 retained_intron Homo_sapiens 8e-19 100
ENST00000517730 PCM1-002 protein_coding Homo_sapiens 0 1522
ENST00000517836 PCM1-012 retained_intron Homo_sapiens 0 551
ENST00000518537 PCM1-005 protein_coding Homo_sapiens 0 1051
ENST00000518762 PCM1-014 processed_transcript Homo_sapiens 0 346
ENST00000518877 PCM1-020 retained_intron Homo_sapiens 0 215
ENST00000518930 PCM1-009 processed_transcript Homo_sapiens 0 516
ENST00000518936 PCM1-008 processed_transcript Homo_sapiens 0 364
ENST00000518985 PCM1-010 processed_transcript Homo_sapiens 0 291
ENST00000519253 PCM1-003 protein_coding Homo_sapiens 0 7334
ENST00000519802 PCM1-023 retained_intron Homo_sapiens 0 699
ENST00000521338 PCM1-022 retained_intron Homo_sapiens 0 363
ENST00000522275 PCM1-016 protein_coding Homo_sapiens 0 2464
ENST00000522777 PCM1-015 retained_intron Homo_sapiens 0 265
ENST00000523055 PCM1-007 protein_coding Homo_sapiens 0 1722
ENST00000523540 PCM1-011 retained_intron Homo_sapiens 0 580
ENST00000523896 PCM1-017 retained_intron Homo_sapiens 0 383
ENST00000524203 PCM1-019 processed_transcript Homo_sapiens 0 305
ENST00000524226 PCM1-004 protein_coding Homo_sapiens 0 4647
ENST00000524356 PCM1-013 retained_intron Homo_sapiens 0 501

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