C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific methyltransferase 2C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045291 Kmt2c-001 ENSMUSG00000038056 10090 - 5:25273609-25498745 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000045291
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000045291 1.428±0.52 1.180±0.44 2.493±0.00 1.606±0.61 1.735±0.62 0.889±0.00 1.096±0.00 0.286±0.05 2.002±0.17 3.194±1.64 3.154±1.45 0.729±0.21

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T7 CIL_0007T7_0002 VISTA 5:24699254-25303507
CIL_0007T1 CIL_0007T1_0002 VISTA 5:24708595-25311977
CIL_00027A CIL_00027A_0002 CGP 5:25222882-25498783

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 ISO nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0016571 IDA histone methylation
GO:0035097 ISO histone methyltransferase complex
GO:0035556 IEA intracellular signal transduction
GO:0042800 ISO histone methyltransferase activity (H3-K4 specific)
GO:0044822 IEA poly(A) RNA binding
GO:0051568 IEA histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262189 KMT2C-001 protein_coding Homo_sapiens 0 16110
ENST00000355193 KMT2C-201 protein_coding Homo_sapiens 0 16110
ENST00000360104 KMT2C-009 protein_coding Homo_sapiens 0 3648
ENST00000418061 KMT2C-015 protein_coding Homo_sapiens 0 815
ENST00000418673 KMT2C-008 protein_coding Homo_sapiens 0 867
ENST00000424877 KMT2C-010 protein_coding Homo_sapiens 0 3703
ENST00000436174 AC027612.3-002 processed_transcript Homo_sapiens 0 442
ENST00000445955 AC027612.3-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 695
ENST00000452749 KMT2C-013 protein_coding Homo_sapiens 0 680
ENST00000470054 BAGE2-001 processed_transcript Homo_sapiens 0 959
ENST00000473186 KMT2C-002 retained_intron Homo_sapiens 0 9311
ENST00000485241 KMT2C-016 processed_transcript Homo_sapiens 0 460
ENST00000489110 KMT2C-014 retained_intron Homo_sapiens 0 363
ENST00000490130 KMT2C-003 retained_intron Homo_sapiens 0 313
ENST00000496773 BAGE2-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 2307
ENST00000558084 KMT2C-018 nonsense_mediated_decay Homo_sapiens 0 16110
ENST00000611488 CH17-125A10.1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 1578
ENST00000614100 CH17-13I23.1-001 unprocessed_pseudogene Homo_sapiens 0 1591
ENST00000615237 RP11-763B22.11-001 unprocessed_pseudogene Homo_sapiens 0 1580
ENST00000620141 CH17-125A10.1-002 processed_transcript Homo_sapiens 0 451
ENST00000625196 RP11-341D18.6-001 unprocessed_pseudogene Homo_sapiens 0 1050

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