C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: seven in absentia 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000045296 Siah1a-201 ENSMUSG00000036840 10090 - 8:86723940-86746006 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000045296
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000045296 16.879±4.32 16.675±5.20 14.406±1.54 35.838±1.54 16.710±3.51 12.517±1.77 7.503±2.06 11.209±2.73 6.828±2.47 20.430±3.18 3.405±0.57 19.488±8.40 5.785±3.12 16.318±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002VR CIL_0002VR_0002 CGP 8:86624043-86746006

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004842 TAS ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0005634 ISS nucleus
GO:0005829 ISS cytosol
GO:0007141 IMP male meiosis I
GO:0007283 IMP spermatogenesis
GO:0008270 IDA zinc ion binding
GO:0009791 IMP post-embryonic development
GO:0016874 IEA ligase activity
GO:0030154 IEA cell differentiation
GO:0040014 IMP regulation of multicellular organism growth
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0042803 IPI protein homodimerization activity
GO:0043161 IDA proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0051402 ISS neuron apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356721 SIAH1-001 protein_coding Homo_sapiens 0 1893
ENST00000380006 SIAH1-003 protein_coding Homo_sapiens 0 1895
ENST00000394725 SIAH1-002 protein_coding Homo_sapiens 0 1953
ENST00000479411 SIAH1P1-001 processed_pseudogene Homo_sapiens 0 680
ENST00000563745 SIAH1-006 protein_coding Homo_sapiens 0 427
ENST00000564259 LONP2-008 processed_transcript Homo_sapiens 0 505
ENST00000565185 LONP2-010 retained_intron Homo_sapiens 0 403
ENST00000565620 SIAH1-007 processed_transcript Homo_sapiens 0 462
ENST00000565867 LONP2-007 protein_coding Homo_sapiens 0 1022
ENST00000566719 LONP2-009 retained_intron Homo_sapiens 0 1330
ENST00000568007 SIAH1-004 nonsense_mediated_decay Homo_sapiens 0 1317

Loading